RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PADI1Q9ULC6 663 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 FAM96BQ9Y3D0 163 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 NCOA6Q14686 2063 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 LOC102723996A0A087X1L8 192 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 IGHV1-45A0A0A0MS14 117 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 K7ESF4 209 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 FARS2O95363 451 aaKnown RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 CST4P01036 141 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 NME2P22392 152 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RAB11FIP2Q7L804 512 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 SPSB1Q96BD6 273 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 CPNE2Q96FN4 548 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 NRIP2Q9BQI9 281 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 WNT16Q9UBV4 365 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 FOXD3Q9UJU5 478 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 CRYM-AS1A6NIL9 109 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 OR5H8P0DN80 308 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 MUC1P15941 1255 aaPredicted RBP16.34■□□□□ 0.21
CPSF3-201ENST00000238112 LPAR6P43657 344 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 SSR4P51571 173 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 EXT1Q16394 746 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 LYSMD4Q5XG99 296 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 OR2A2Q6IF42 318 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 FAM230AA0A1W2PPH8 454 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 TNFSF11O14788 317 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 ANGPTL7O43827 346 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 ZIC3O60481 467 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 DEDDO75618 318 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 NPBWR1P48145 328 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 MRPS34P82930 218 aaKnown RBP16.34■□□□□ 0.21
CPSF3-201ENST00000238112 FAM27BQ5VT28 67 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 OR2AE1Q8NHA4 323 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 SAP25Q8TEE9 199 aa16.34■□□□□ 0.21
CPSF3-201ENST00000238112 RCC2Q9P258 522 aaKnown RBP16.34■□□□□ 0.21
CPSF3-201ENST00000238112 SULT1A2P50226 295 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 TAF9Q16594 264 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 GGNBP1Q5YKI7 109 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 TMEM156Q8N614 296 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF837Q96EG3 531 aaPredicted RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 REEP6Q96HR9 211 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FAAP24Q9BTP7 215 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 NECAP2Q9NVZ3 263 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 TUBD1Q9UJT1 453 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 PTRH2Q9Y3E5 179 aaKnown RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF175Q9Y473 711 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 LSM5Q9Y4Y9 91 aaKnown RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF850A8MQ14 1090 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 SGCEO43556 437 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 SPRY1O43609 319 aaPredicted RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 GDF9O60383 454 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FBXO24O75426 580 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 JTBO76095 146 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 KLK3P07288 261 aaPredicted RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FGF5P12034 268 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 PRKACAP17612 351 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 ACKR3P25106 362 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FCGR2CP31995 323 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 SUCLG1P53597 346 aaKnown RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 RAB35Q15286 201 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 CNN3Q15417 329 aaKnown RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 C20orf196Q8IYI0 205 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 ZIC4Q8N9L1 334 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 NAT6Q93015 286 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 PRRX2Q99811 253 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 CMSS1Q9BQ75 279 aaKnown RBP16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FSCN3Q9NQT6 498 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 FBXL17Q9UF56 701 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 AK3Q9UIJ7 227 aa16.33■□□□□ 0.2
CPSF3-201ENST00000238112 A0A0J9YW62 118 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 RNASEK-C17orf49H0YIS7 233 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 SCGB1D2O95969 90 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 RAC1P63000 192 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 TMEM268Q5VZI3 342 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 LINC00518Q8N0U6 118 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 MR1Q95460 341 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 TOMM40LQ969M1 308 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 MRPL24Q96A35 216 aaKnown RBP16.32■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF775Q96BV0 537 aaPredicted RBP16.32■□□□□ 0.2
CPSF3-201ENST00000238112 IMMP1LQ96LU5 166 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 ZNF700Q9H0M5 742 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 PROK2Q9HC23 129 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 DECR2Q9NUI1 292 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 KCNIP3Q9Y2W7 256 aa16.32■□□□□ 0.2
CPSF3-201ENST00000238112 GAPDHP04406 335 aaKnown RBP16.31■□□□□ 0.2
CPSF3-201ENST00000238112 UMODP07911 640 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 COX6A1P12074 109 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 RRADP55042 308 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 PIGPP57054 158 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 SPEM2Q0P670 501 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 IL11RAQ14626 422 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 ZFP57Q9NU63 452 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 HSF4Q9ULV5 492 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 GJE1A6NN92 205 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 AGPAT2O15120 278 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 SFTA3P0C7M3 94 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 CRYGSP22914 178 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 OPRM1P35372 400 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 ABCA11PQ4W5N1 156 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 SRXN1Q9BYN0 137 aa16.31■□□□□ 0.2
CPSF3-201ENST00000238112 SMIM3Q9BZL3 60 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms