RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NXPH3O95157 252 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ACSM6Q6P461 480 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GJB7Q6PEY0 223 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 WDR82Q6UXN9 313 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 Q6ZVH6 145 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR2AJ1Q8NGZ0 328 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RHOXF1Q8NHV9 184 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CAPNS2Q96L46 248 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SFXN3Q9BWM7 321 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 KCNIP2Q9NS61 270 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DKK4Q9UBT3 224 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 COA3Q9Y2R0 106 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RAPGEF2Q9Y4G8 1499 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ARL6IP5O75915 188 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 NPBWR2P48146 333 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 LILRA4P59901 499 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SEC61A1P61619 476 aaKnown RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE2BQ13066 116 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE2EQ4V326 116 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 KIRREL2Q6UWL6 708 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF695Q8IW36 515 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 NRGNQ92686 78 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 LAT2Q9GZY6 243 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE2DQ9UEU5 116 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SETD2Q9BYW2 2564 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PRD5 423 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HSPB2A8KAH6 182 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ENGP17813 658 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HSPB2Q16082 182 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PTPRNQ16849 979 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TBPL2Q6SJ96 375 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 LYG1Q8N1E2 194 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CMTM2Q8TAZ6 248 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GALNT14Q96FL9 552 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GP6Q9HCN6 339 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GKN1Q9NS71 199 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 MBLAC1A4D2B0 266 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PLPP2O43688 288 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CREBL2O60519 120 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SLC25A27O95847 323 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TNFRSF1BP20333 461 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ERVS71-1P61550 626 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 UBE2V2Q15819 145 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 Q6ZPB1 254 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF611Q8N823 705 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 MDGA1Q8NFP4 955 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR4F17Q8NGA8 305 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR4F5Q8NH21 305 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 C20orf173Q96LM9 149 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR4F4Q96R69 305 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PARP12Q9H0J9 701 aaKnown RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RPS6KB2Q9UBS0 482 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DMBT1Q9UGM3 2413 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 FTCDNL1E5RQL4 147 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SLC37A4O43826 429 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CHST1O43916 411 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 FCGR3BO75015 233 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HLA-HP01893 362 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PRTN3P24158 256 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PPP2CBP62714 309 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PPP2CAP67775 309 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HLA-DRB5Q30154 266 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 KLF17Q5JT82 389 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SLC25A34Q6PIV7 304 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 AGTRAPQ6RW13 159 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZDHHC22Q8N966 263 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 UCN3Q969E3 161 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OAZ3Q9UMX2 235 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 WIPI2Q9Y4P8 454 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RFNGQ9Y644 331 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GLTPD2A6NH11 291 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CYB561D2O14569 222 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF217O75362 1048 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PRPH2P23942 346 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DRD3P35462 400 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RPL31P62899 125 aaKnown RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GTF2BQ00403 316 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 MMDQ15546 238 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 UTF1Q5T230 341 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM215Q68D42 235 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR2W3Q7Z3T1 314 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM37Q8WXS4 190 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 KLF2Q9Y5W3 355 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31A1Q5TZJ5 1347 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31A5Q5VU36 1347 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA31A7Q8IWB4 1347 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 UHRF1BP1Q6BDS2 1440 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 H3BQ15 152 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RHODO00212 210 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 BRS3P32247 399 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SRSF9Q13242 221 aaKnown RBP eCLIP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SSX1Q16384 188 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 C1orf210Q8IVY1 113 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR2V1Q8NHB1 315 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GPKOWQ92917 476 aaPredicted RBP eCLIP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TM4SF19Q96DZ7 209 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 WSB2Q9NYS7 404 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GPR132Q9UNW8 380 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 R4GN57 208 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ABCC8Q09428 1581 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms