RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MPIG6BO95866 241 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 B3GALT4O96024 378 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CD33P20138 364 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 APOBEC3AP31941 199 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GPM6AP51674 278 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TESK1Q15569 626 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF528Q3MIS6 628 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF766Q5HY98 468 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF385CQ66K41 422 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GOLGA7Q7Z5G4 137 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NPAS3Q8IXF0 933 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CEND1Q8N111 149 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR2A1Q8NGT9 310 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR2G2Q8NGZ5 317 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 IL1F10Q8WWZ1 152 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MOB3AQ96BX8 217 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MRGPRX1Q96LB2 322 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FAM206AQ9NX38 181 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GMPR2Q9P2T1 348 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NPIPB15A6NHN6 443 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM210A6NLX4 147 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LEFTY2O00292 366 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC37A4O43826 429 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NRASP01111 189 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 HLA-DQA1P01909 254 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 BCHEP06276 602 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SFTA3P0C7M3 94 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SPATA31C1P0DKV0 1188 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PVRP15151 417 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 B4GALT1P15291 398 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR3A1P47881 315 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GNB1P62873 340 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SRSF9Q13242 221 aaKnown RBP eCLIP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GAMTQ14353 236 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR8G1Q15617 311 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ELAVL1Q15717 326 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GAB4Q2WGN9 574 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FRG2Q64ET8 278 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FAM71AQ8IYT1 594 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TEX26Q8N6G2 289 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OIT3Q8WWZ8 545 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZBTB45Q96K62 511 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FRG2BQ96QU4 278 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF300Q96RE9 604 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ALKBH7Q9BT30 221 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CTDSP1Q9GZU7 261 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SEMA4GQ9NTN9 838 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FZD1Q9UP38 647 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MN1Q10571 1320 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM229AB2RXF0 380 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SAP18O00422 153 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PDE6DO43924 150 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR2F2O95006 317 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GABRB3P28472 473 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 UFM1P61960 85 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MGAT2Q10469 447 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR2F1Q13607 317 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 DEFB133Q30KQ1 61 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 HLA-BQ31612 363 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LRIT3Q3SXY7 679 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CXorf66Q5JRM2 361 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CYB5R2Q6BCY4 276 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LHFPL2Q6ZUX7 228 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF534Q76KX8 674 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NUFIP2Q7Z417 695 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 C6orf201Q7Z4U5 140 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SIAH3Q8IW03 269 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NKAIN3Q8N8D7 197 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR13H1Q8NG92 308 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR51A7Q8NH64 312 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LGALS14Q8TCE9 139 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC7A6Q92536 515 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MAP6Q96JE9 813 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CALHM2Q9HA72 323 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1W2PP55 124 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 C11orf98E9PRG8 122 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR7C2O60412 319 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 HAND1O96004 215 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR5G3P0C626 314 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LMO2P25791 158 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 RELQ04864 619 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 DNAJC5GQ8N7S2 189 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL43Q8N983 215 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF485Q8NCK3 441 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR11G2Q8NGC1 345 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 IGDCC4Q8TDY8 1250 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PHYHIPQ92561 330 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TVP23CQ96ET8 276 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF845Q96IR2 970 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NPAS1Q99742 590 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A19Q9HC21 320 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MON2Q7Z3U7 1717 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GTQ1 180 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1W2PNV4 684 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TNFRSF10CO14798 259 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GIPP09681 153 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SOX18P35713 384 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GALR1P47211 349 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TM4SF4P48230 202 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TRA2BP62995 288 aaKnown RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms