RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 Q96M85 177 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PACRGQ96M98 296 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 METTL26Q96S19 204 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 VN1R1Q9GZP7 353 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CXorf36Q9H7Y0 433 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM165Q9HC07 324 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 NTMQ9P121 344 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 GTF3C1Q12789 2109 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LOC285556D6RIA3 1793 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PRR19A6NJB7 356 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 G3V2L1 256 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 DHHO43323 396 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OIP5O43482 229 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A5P05141 298 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 GP1BAP07359 652 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 H2AFB1P0C5Y9 115 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SULT1A3P0DMM9 295 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SULT1A4P0DMN0 295 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 HMGA1P17096 107 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TEAD1P28347 426 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LYZP61626 148 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF90Q03938 601 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RPL18Q07020 188 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 AMMECR1LQ6DCA0 310 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RAX2Q96IS3 184 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OR5B21A6NL26 309 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 GPR31O00270 319 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 MMP11P24347 488 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 MTNR1BP49286 362 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM81Q6P7N7 255 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CCBE1Q6UXH8 406 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TGIF2LYQ8IUE0 185 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OR10V1Q8NGI7 309 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LMO3Q8TAP4 145 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 UBALD1Q8TB05 177 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 EXTL1Q92935 676 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LINC00615Q96LM1 132 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PLA2G12AQ9BZM1 189 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ARL2-SNX15V9GYD0 113 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 IGKV3-7A0A075B6H7 116 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 LOC102723971A0A1B0GUV8 181 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CALCBP10092 127 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 BMP2P12643 396 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 NXPH1P58417 271 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 TM4SF20Q53R12 229 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OTUD1Q5VV17 481 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR4S2Q8NH73 311 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 RCE1Q9Y256 329 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 QSER1Q2KHR3 1735 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 RREB1Q92766 1687 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 IGHV1OR21-1A0A087WYE8 117 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PR80 420 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 JTBO76095 146 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 KLKB1P03952 638 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FCGR2CP31995 323 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CA5AP35218 305 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 ERVFC1-1P60608 527 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 GUCA2AQ02747 115 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 ROM1Q03395 351 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FOXF1Q12946 379 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 TBCEQ15813 527 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 BEX5Q5H9J7 111 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 DHRS4L2Q6PKH6 230 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SLC24A4Q8NFF2 622 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR51S1Q8NGJ8 323 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR13C5Q8NGS8 318 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR2I1PQ8NGU4 316 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 AKR7LQ8NHP1 331 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SPSB1Q96BD6 273 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SLA2Q9H6Q3 261 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OOEPA6NGQ2 149 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 TAAR5O14804 337 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 B3GALT4O96024 378 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FOXA1P55317 472 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 UBE2MP61081 183 aaKnown RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SRSF5Q13243 272 aaKnown RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 RNF212Q495C1 297 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 PLK5Q496M5 336 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 ZBTB37Q5TC79 503 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 WFDC3Q8IUB2 231 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 VRK3Q8IV63 474 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 KCNRGQ8N5I3 272 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SCARB1Q8WTV0 552 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 BIRC8Q96P09 236 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A22Q9H936 323 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 RNF7Q9UBF6 113 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1B0GTQ1 180 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 ZBTB42B2RXF5 422 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 NME4O00746 187 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FGF17O60258 216 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 MITFO75030 526 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SKP2Q13309 424 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SAXO2Q658L1 398 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR52M1Q8NGK5 317 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR10K1Q8NGX5 313 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 AK3Q9UIJ7 227 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CD1EP15812 388 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 ATF1P18846 271 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FOXO1Q12778 655 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CMPK2Q5EBM0 449 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms