RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MCHR1Q99705 422 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CENPMQ9NSP4 180 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM242Q9NWH2 141 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 INSL6Q9Y581 213 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SCN7AQ01118 1682 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 A0A1B0GU03 582 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OR2AG2A6NM03 316 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 H3BSH0 61 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 SCGB2A1O75556 95 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 WISP3O95389 354 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CD160O95971 181 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 KNG1P01042 644 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CTSDP07339 412 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 HNRNPA2B1P22626 353 aaKnown RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 UCP1P25874 307 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OPRD1P41143 372 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PPP2CBP62714 309 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PPP2CAP67775 309 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 MRPS34P82930 218 aaKnown RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 AESQ08117 197 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 EIF4EBP2Q13542 120 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 PHYHD1Q5SRE7 291 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ATXN7L2Q5T6C5 722 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 STAC2Q6ZMT1 411 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 UEVLDQ8IX04 471 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CMTM8Q8IZV2 173 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 D2HGDHQ8N465 521 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OR10P1Q8NGE3 313 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 OR10S1Q8NGN2 331 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 FAM222BQ8WU58 562 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ZMYND19Q96E35 227 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-216ENST00000637968 ALG14Q96F25 216 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CHST8Q9H2A9 424 aa5.13□□□□□ -1.59
SCN1A-216ENST00000637968 CDC14CA4D256 554 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF891A8MT65 544 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HYAL3O43820 417 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 AZU1P20160 251 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PPP1CCP36873 323 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 AMTP48728 403 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 RND3P61587 244 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MFGE8Q08431 387 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF74Q16587 644 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GGTA1PQ4G0N0 100 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 FFAR4Q5NUL3 377 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SLC8B1Q6J4K2 584 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SLCO4C1Q6ZQN7 724 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 COMMD6Q7Z4G1 85 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 FER1L6-AS1Q8NA97 138 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 OR5P2Q8WZ92 322 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 UBE2E3Q969T4 207 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ANAPC16Q96DE5 110 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MRAP2Q96G30 205 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 IMMP2LQ96T52 175 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GPR20Q99678 358 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 BOCQ9BWV1 1114 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PADI3Q9ULW8 664 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LOC105371242A0A075B767 164 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 DUXBA0A1W2PPF3 345 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ZC3H12DA2A288 527 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MSGN1A6NI15 193 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SLC2A10O95528 541 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 IL18BPO95998 194 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HRASP01112 189 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HPNP05981 417 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SRP19P09132 144 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MMP9P14780 707 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 AMY2BP19961 511 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 TCEA2Q15560 299 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PMCHL1Q16048 86 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 RAET1LQ5VY80 246 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 WDR25Q64LD2 544 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PLXDC2Q6UX71 529 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 FA2HQ7L5A8 372 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 C16orf82Q7Z2V1 217 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 APCDD1LQ8NCL9 501 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SLC38A5Q8WUX1 472 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SSBP4Q9BWG4 385 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PRSS50Q9UI38 385 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 WDR81Q562E7 1941 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LOXHD1Q8IVV2 1947 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 A0A1B0GVT2 93 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF850A8MQ14 1090 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 NPIPB7O75200 414 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 CTAG2O75638 210 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 CATP04040 527 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SFTPDP35247 375 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HERV-K104P63124 156 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 PLPPR5Q32ZL2 321 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 ALG10Q5BKT4 473 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 SPRED2Q7Z698 418 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 MARCH1Q8TCQ1 289 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 C2orf15Q8WU43 125 aaKnown RBP5.12□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM40Q8WWA1 233 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 RLN3Q8WXF3 142 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 FGGYQ96C11 551 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LPAR5Q9H1C0 372 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 HIF1ANQ9NWT6 349 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 GJD2Q9UKL4 321 aa5.12□□□□□ -1.59
SCN1A-216ENST00000637968 LTN1O94822 1766 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms