RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TPRKBQ9Y3C4 175 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 SNX5Q9Y5X3 404 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 DOCK11Q5JSL3 2073 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 CDK1P06493 297 aa16■□□□□ 0.15
CLN3-260ENST00000637578 SLC35A2P78381 396 aa16■□□□□ 0.15
CLN3-260ENST00000637578 PRDX4Q13162 271 aa16■□□□□ 0.15
CLN3-260ENST00000637578 BCL2L15Q5TBC7 163 aa16■□□□□ 0.15
CLN3-260ENST00000637578 OR2G6Q5TZ20 316 aa16■□□□□ 0.15
CLN3-260ENST00000637578 BTNL3Q6UXE8 466 aa16■□□□□ 0.15
CLN3-260ENST00000637578 WDR82Q6UXN9 313 aa16■□□□□ 0.15
CLN3-260ENST00000637578 CATSPERDQ86XM0 798 aa16■□□□□ 0.15
CLN3-260ENST00000637578 FAM90A1Q86YD7 464 aa16■□□□□ 0.15
CLN3-260ENST00000637578 BOLLQ8N9W6 283 aaKnown RBP16■□□□□ 0.15
CLN3-260ENST00000637578 OR5P3Q8WZ94 311 aa16■□□□□ 0.15
CLN3-260ENST00000637578 SLC6A7Q99884 636 aa16■□□□□ 0.15
CLN3-260ENST00000637578 SUCNR1Q9BXA5 334 aa16■□□□□ 0.15
CLN3-260ENST00000637578 DUSP21Q9H596 190 aa16■□□□□ 0.15
CLN3-260ENST00000637578 KAAG1Q9UBP8 84 aa16■□□□□ 0.15
CLN3-260ENST00000637578 NUP50Q9UKX7 468 aa16■□□□□ 0.15
CLN3-260ENST00000637578 SLC22A13Q9Y226 551 aa16■□□□□ 0.15
CLN3-260ENST00000637578 CAB39Q9Y376 341 aaPredicted RBP16■□□□□ 0.15
CLN3-260ENST00000637578 TTRP02766 147 aa16■□□□□ 0.15
CLN3-260ENST00000637578 EGR1P18146 543 aa16■□□□□ 0.15
CLN3-260ENST00000637578 FPR2P25090 351 aa16■□□□□ 0.15
CLN3-260ENST00000637578 MED21Q13503 144 aa16■□□□□ 0.15
CLN3-260ENST00000637578 ARMCX4Q5H9R4 360 aa16■□□□□ 0.15
CLN3-260ENST00000637578 RBM48Q5RL73 367 aaKnown RBP16■□□□□ 0.15
CLN3-260ENST00000637578 EGFL6Q8IUX8 553 aa16■□□□□ 0.15
CLN3-260ENST00000637578 ELMOD2Q8IZ81 293 aa16■□□□□ 0.15
CLN3-260ENST00000637578 PRSS35Q8N3Z0 413 aa16■□□□□ 0.15
CLN3-260ENST00000637578 MYDGFQ969H8 173 aa16■□□□□ 0.15
CLN3-260ENST00000637578 UPRTQ96BW1 309 aa16■□□□□ 0.15
CLN3-260ENST00000637578 MICU1Q9BPX6 476 aa16■□□□□ 0.15
CLN3-260ENST00000637578 FGF23Q9GZV9 251 aaPredicted RBP16■□□□□ 0.15
CLN3-260ENST00000637578 CHCHD3Q9NX63 227 aaKnown RBP16■□□□□ 0.15
CLN3-260ENST00000637578 ERVK-18Q9QC07 812 aa16■□□□□ 0.15
CLN3-260ENST00000637578 hCG_1807616A0A1W2PRN6 198 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 ANXA2P2A6NMY6 339 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 ZNF850A8MQ14 1090 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 C22orf46C9J442 243 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 E9PI62 339 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.99■□□□□ 0.15
CLN3-260ENST00000637578 ATP6V1B1P15313 513 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 NANOS3P60323 173 aaKnown RBP15.99■□□□□ 0.15
CLN3-260ENST00000637578 WDR38Q5JTN6 314 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 TMPRSS11AQ6ZMR5 421 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 OR2G2Q8NGZ5 317 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 OR51E1Q8TCB6 317 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 HPSE2Q8WWQ2 592 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 JMJD8Q96S16 334 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 NUDT16L1Q9BRJ7 211 aaKnown RBP15.99■□□□□ 0.15
CLN3-260ENST00000637578 RTL8AQ9BWD3 113 aa15.99■□□□□ 0.15
CLN3-260ENST00000637578 TMEM210A6NLX4 147 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 CDIPTO14735 213 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 FCN3O75636 299 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 RGS9O75916 674 aaPredicted RBP15.98■□□□□ 0.15
CLN3-260ENST00000637578 HTR1AP08908 422 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 MUC1P15941 1255 aaPredicted RBP15.98■□□□□ 0.15
CLN3-260ENST00000637578 KIR3DL2P43630 455 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 MAP2K3P46734 347 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 C11orf91Q3C1V1 193 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 FDX2Q6P4F2 183 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 BPIFB2Q8N4F0 458 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.98■□□□□ 0.15
CLN3-260ENST00000637578 OR52N1Q8NH53 320 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 LRRC29Q8WV35 223 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 PIGCQ92535 297 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 GPR84Q9NQS5 396 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 ZNF69Q9UC07 566 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 LRRC42Q9Y546 428 aa15.98■□□□□ 0.15
CLN3-260ENST00000637578 ZNF816-ZNF321PA0A0X1KG74 233 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 SRRM5B3KS81 715 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 ADAM20O43506 726 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 GYPAP02724 150 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 ODF4Q2M2E3 257 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 CD276Q5ZPR3 534 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 COMMD2Q86X83 199 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 ZNF485Q8NCK3 441 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 OR10Z1Q8NGY1 313 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 FAM216AQ8WUB2 273 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 C12orf43Q96C57 262 aaKnown RBP15.97■□□□□ 0.15
CLN3-260ENST00000637578 CDCA4Q9BXL8 241 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 SMURF1Q9HCE7 757 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 ESM1Q9NQ30 184 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 FRRS1LQ9P0K9 344 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 BLOC1S6Q9UL45 172 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 ANK2Q01484 3957 aa15.97■□□□□ 0.15
CLN3-260ENST00000637578 P2RY10O00398 339 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 MYL12BO14950 172 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 RGS10O43665 173 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 ENSAO43768 121 aaKnown RBP15.96■□□□□ 0.15
CLN3-260ENST00000637578 MT-ND2P03891 347 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 GTF2A1P52655 376 aaPredicted RBP15.96■□□□□ 0.15
CLN3-260ENST00000637578 GBX2P52951 348 aaPredicted RBP15.96■□□□□ 0.15
CLN3-260ENST00000637578 MICBQ29980 383 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 ZBTB37Q5TC79 503 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 XAF1Q6GPH4 301 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 C9orf139Q6ZV77 190 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 ZDHHC23Q8IYP9 409 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 ZDHHC22Q8N966 263 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms