RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF718Q3SXZ3 478 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 RGS7BPQ6MZT1 257 aaPredicted RBP17.17■□□□□ 0.34
CLN3-250ENST00000636839 Q6ZR03 302 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 TMEM171Q8WVE6 324 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 USB1Q9BQ65 265 aaKnown RBP17.17■□□□□ 0.34
CLN3-250ENST00000636839 CCDC32Q9BV29 185 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 MRPL15Q9P015 296 aaKnown RBP17.17■□□□□ 0.34
CLN3-250ENST00000636839 RAB22AQ9UL26 194 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 TRAV18A0A075B6X5 111 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 CDC14BO60729 498 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 HAAOP46952 286 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 TAS2R20P59543 309 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 C4orf17Q53FE4 359 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 TMEM108Q6UXF1 575 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 WDR86Q86TI4 376 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 OR10AD1Q8NGE0 317 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 SYT3Q9BQG1 590 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 OR10A4Q9H209 315 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 AUNIPQ9H7T9 357 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 PALMDQ9NP74 551 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 KCNJ16Q9NPI9 418 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 ICE1Q9Y2F5 2266 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 ROS1P08922 2347 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 A0A1B0GVG6 124 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 MEIOCA2RUB1 952 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 XRCC3O43542 346 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 TIMM8AO60220 97 aaPredicted RBP17.16■□□□□ 0.34
CLN3-250ENST00000636839 GCH1P30793 250 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 TFF3Q07654 80 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 ZNF181Q2M3W8 571 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 MBNL2Q5VZF2 373 aaKnown RBP17.16■□□□□ 0.34
CLN3-250ENST00000636839 PYHIN1Q6K0P9 492 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 UNQ6126/PRO20091Q6UXV3 157 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 SLC25A26Q70HW3 274 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 HIST1H2AAQ96QV6 131 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 LPAR5Q9H1C0 372 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 ZNF581Q9P0T4 197 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 MPC1Q9Y5U8 109 aa17.16■□□□□ 0.34
CLN3-250ENST00000636839 MLNRO43193 412 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 SFTPBP07988 381 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 CD3GP09693 182 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 ALDH3B1P43353 468 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 VEGFCP49767 419 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 ADAM5Q6NVV9 412 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 ZNF611Q8N823 705 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 OR5A2Q8NGI9 324 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 TECTBQ96PL2 329 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 TBC1D24Q9ULP9 559 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 PLCE1Q9P212 2302 aa17.15■□□□□ 0.34
CLN3-250ENST00000636839 F8VVB4 439 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 F8VWA3 439 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 RAB27BO00194 218 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 RAB6AP20340 208 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 KITLGP21583 273 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 PTAFRP25105 342 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 PTBP1P26599 531 aaKnown RBP eCLIP17.14■□□□□ 0.34
CLN3-250ENST00000636839 GLRXP35754 106 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 NPBWR2P48146 333 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 SLC22A25Q6T423 547 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 OR8G5Q8NG78 346 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 OR51F2Q8NH61 342 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 KCNG3Q8TAE7 436 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 HS3ST6Q96QI5 342 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 S100A13Q99584 98 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 THAP7Q9BT49 309 aaPredicted RBP17.14■□□□□ 0.34
CLN3-250ENST00000636839 FBLN5Q9UBX5 448 aa17.14■□□□□ 0.34
CLN3-250ENST00000636839 PYCARD-AS1I3L0S3 204 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 SYNGR1O43759 233 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 HTR3BO95264 441 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 MGMTP16455 207 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 GUCA2AQ02747 115 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 OR8S1Q8NH09 359 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 PTX4Q96A99 478 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 ADAT1Q9BUB4 502 aaKnown RBP17.14■□□□□ 0.33
CLN3-250ENST00000636839 TMEM59Q9BXS4 323 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 DIABLOQ9NR28 239 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 TMEM100Q9NV29 134 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 SPEF1Q9Y4P9 236 aa17.14■□□□□ 0.33
CLN3-250ENST00000636839 SPTBN1Q01082 2364 aaKnown RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 SOCS1O15524 211 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 SSX4O60224 188 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 C1QL1O75973 258 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 ZNF250P15622 560 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 PPP3CBP16298 524 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 NR4A2P43354 598 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 RSU1Q15404 277 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 HAGHLQ6PII5 290 aaPredicted RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 ZNF843Q8N446 348 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 ITLN2Q8WWU7 325 aaPredicted RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 NEUROG1Q92886 237 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 SLAMF9Q96A28 289 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 ZNF488Q96MN9 340 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 MRPL37Q9BZE1 423 aaKnown RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 SELENOIQ9C0D9 397 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 B8ZZF3 427 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 RHBDL1O75783 438 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 FCER2P06734 321 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 SRP9P49458 86 aaKnown RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 ASCL4Q6XD76 172 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 OR2W3Q7Z3T1 314 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms