RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 MPV17LQ2QL34 196 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 SMIM21Q3B7S5 101 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 TXNDC8Q6A555 127 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 UNQ5815/PRO19632Q6UWF5 114 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 THSD4Q6ZMP0 1018 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 H1FOOQ8IZA3 346 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-213ENST00000636759 C17orf78Q8N4C9 275 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 IL22RA1Q8N6P7 574 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 FNDC9Q8TBE3 224 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM170AQ8WVE7 144 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 CCDC74AQ96AQ1 378 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 WDR34Q96EX3 536 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 OR10C1Q96KK4 312 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 CMKLR1Q99788 373 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 MS4A8Q9BY19 250 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 PRSS16Q9NQE7 514 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 CKLFQ9UBR5 152 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 UQCR10Q9UDW1 63 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 KLK13Q9UKR3 277 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 SIGLEC7Q9Y286 467 aa6.07□□□□□ -1.44
SCN1A-213ENST00000636759 TRAV27A0A087WT01 109 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SERPINE3A8MV23 424 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 GPR137BO60478 399 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CTSVO60911 334 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TOX4O94842 621 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 STAG3L3P0CL85 134 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 P2RY1P47900 373 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CNN1P51911 297 aaKnown RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 NANOS3P60323 173 aaKnown RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 RHOAP61586 193 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CLEC18BQ6UXF7 455 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 DPPA3Q6W0C5 159 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 FBXW12Q6X9E4 464 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 POC1AQ8NBT0 407 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 NECAP1Q8NC96 275 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM239Q8WW34 195 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 UBE2E3Q969T4 207 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SLC41A2Q96JW4 573 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ARHGDIGQ99819 225 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 MEGF9Q9H1U4 602 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SIRT3Q9NTG7 399 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PRR13Q9NZ81 148 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 AK3Q9UIJ7 227 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 MED31Q9Y3C7 131 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TRANK1O15050 2925 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 A0A1B0GU03 582 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CLEC18AA5D8T8 446 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 B4GALT2O60909 372 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SLCO2B1O94956 709 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 NDUFB8O95169 186 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM225BP0DP42 221 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ZNF708P17019 499 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PDLIM4P50479 330 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CCR5P51681 352 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ERVS71-1P61550 626 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SUMO1P63165 101 aaKnown RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 RUNX2Q13950 521 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SLC17A1Q14916 467 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PLEKHS1Q5SXH7 462 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ZNF468Q5VIY5 522 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CLEC18CQ8NCF0 446 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 OR4B1Q8NGF8 309 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 OR2G3Q8NGZ4 309 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 VN1R17PQ8TDU5 208 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PINX1Q96BK5 328 aaKnown RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 Q96M85 177 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PLK3Q9H4B4 646 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 WIPI2Q9Y4P8 454 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 A0A0A6YYH2 397 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TRAV34A0A0B4J273 112 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 IGHV2OR16-5A0A0B4J2B6 119 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CDC14CA4D256 554 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 MAP1LC3B2A6NCE7 125 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM202A6NGA9 273 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 A6NJ64 397 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 C1QTNF3-AMACRE9PGA6 284 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 H7BYZ3 331 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 HBE1P02100 147 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 MMP9P14780 707 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 LMO1P25800 156 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CCKBRP32239 447 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 COMPP49747 757 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 PSG6Q00889 435 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SPOCK1Q08629 439 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 NUMA1Q14980 2115 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 WDR25Q64LD2 544 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-213ENST00000636759 SLCO4C1Q6ZQN7 724 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 COX15Q7KZN9 410 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TGIF2LYQ8IUE0 185 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 C9orf40Q8IXQ3 194 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 CXorf40AQ8TE69 158 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM234Q8WY98 164 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 RSPRY1Q96DX4 576 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 MAP1LC3BQ9GZQ8 125 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 OR6C3Q9NZP0 311 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 ADAM29Q9UKF5 820 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 VCANP13611 3396 aa6.06□□□□□ -1.44
SCN1A-213ENST00000636759 YLPM1P49750 1951 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 C22orf46C9J442 243 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms