RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FGF23Q9GZV9 251 aaPredicted RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 DUSP21Q9H596 190 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 PCDHB10Q9UN67 800 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 STAB1Q9NY15 2570 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 PPIAL4EA0A075B759 164 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 PPIAL4DF5H284 164 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 MT-ND2P03891 347 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 PPIAL4FP0DN26 164 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 RNLSQ5VYX0 342 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 SCCPDHQ8NBX0 429 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 GPR148Q8TDV2 347 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 LRRC29Q8WV35 223 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 ADAT3Q96EY9 351 aaPredicted RBP15.19■□□□□ 0.02
CLN3-239ENST00000628023 SHARPINQ9H0F6 387 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 ZNF281Q9Y2X9 895 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 PPIAL4AQ9Y536 164 aa15.19■□□□□ 0.02
CLN3-239ENST00000628023 FAM230AA0A1W2PPH8 454 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 OGG1O15527 345 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 IGHV4-31P0DP07 118 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 IL2RGP31785 369 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 CD80P33681 288 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 SOX2P48431 317 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 MED22Q15528 200 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 TMEM155Q4W5P6 130 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 FAM201AQ5SY85 155 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 HAGHLQ6PII5 290 aaPredicted RBP15.18■□□□□ 0.02
CLN3-239ENST00000628023 WDR82Q6UXN9 313 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 PRSS48Q7RTY5 328 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 ZNF573Q86YE8 665 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 ZNF485Q8NCK3 441 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 TLNRD1Q9H1K6 362 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 METTL17Q9H7H0 456 aaPredicted RBP15.18■□□□□ 0.02
CLN3-239ENST00000628023 ZNF665Q9H7R5 613 aa15.18■□□□□ 0.02
CLN3-239ENST00000628023 SIRT4Q9Y6E7 314 aaPredicted RBP15.18■□□□□ 0.02
CLN3-239ENST00000628023 C3orf80F5H4A9 247 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 CD2P06729 351 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 ZNF16P17020 682 aaPredicted RBP15.17■□□□□ 0.02
CLN3-239ENST00000628023 CELP19835 753 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 HAAOP46952 286 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 GMFBP60983 142 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 SPHARQ15513 63 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 KCNJ8Q15842 424 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 DMKNQ6E0U4 476 aaPredicted RBP15.17■□□□□ 0.02
CLN3-239ENST00000628023 SFRP4Q6FHJ7 346 aaPredicted RBP15.17■□□□□ 0.02
CLN3-239ENST00000628023 LRRC28Q86X40 367 aaPredicted RBP15.17■□□□□ 0.02
CLN3-239ENST00000628023 C11orf53Q8IXP5 236 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 C19orf18Q8NEA5 215 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 DEFB108BQ8NET1 73 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 RPS4Y2Q8TD47 263 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 GHSRQ92847 366 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 BORCS8Q96FH0 119 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 OR51I2Q9H344 312 aa15.17■□□□□ 0.02
CLN3-239ENST00000628023 YLPM1P49750 1951 aaKnown RBP15.16■□□□□ 0.02
CLN3-239ENST00000628023 TRAV38-1A0A0B4J264 116 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 PQLC2LA1A4F0 135 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 OOEPA6NGQ2 149 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 LGALS8O00214 317 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 IGHV2-5P01817 119 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 RPS2P15880 293 aaKnown RBP15.16■□□□□ 0.02
CLN3-239ENST00000628023 EGR1P18146 543 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 FUT6P51993 359 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 GABARAPL2P60520 117 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 HOXA4Q00056 320 aaPredicted RBP15.16■□□□□ 0.02
CLN3-239ENST00000628023 BDH1Q02338 343 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 IRF3Q14653 427 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 UBE2V2Q15819 145 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 FAM76BQ5HYJ3 339 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 UTS2BQ765I0 119 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 OR13C9Q8NGT0 318 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 OR10Z1Q8NGY1 313 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 ZNF671Q8TAW3 534 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 RGP1Q92546 391 aaPredicted RBP15.16■□□□□ 0.02
CLN3-239ENST00000628023 OR5M11Q96RB7 305 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 NEK6Q9HC98 313 aa15.16■□□□□ 0.02
CLN3-239ENST00000628023 CEACAM18A8MTB9 384 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 J3QT63 122 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 HSMCR30P0CW71 290 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 ATF1P18846 271 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 PRKACBP22694 351 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 AZGP1P25311 298 aaKnown RBP15.15■□□□□ 0.02
CLN3-239ENST00000628023 LMO4P61968 165 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 ZNF404Q494X3 552 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 YIF1BQ5BJH7 314 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 FAM166AQ6J272 317 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 SERPINA12Q8IW75 414 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 GCSAMQ8N6F7 178 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 LINC01356Q8N9X3 169 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 OR5D14Q8NGL3 314 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 OR13C5Q8NGS8 318 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 SPSB1Q96BD6 273 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 ZCCHC4Q9H5U6 513 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 LPAR2Q9HBW0 351 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 DNAJB11Q9UBS4 358 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 KCNS2Q9ULS6 477 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 POLDIP2Q9Y2S7 368 aa15.15■□□□□ 0.02
CLN3-239ENST00000628023 IGHV3OR15-7A0A075B7D8 119 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 PHF1O43189 567 aaPredicted RBP15.14■□□□□ 0.01
CLN3-239ENST00000628023 AKR7A2O43488 359 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 PLPP2O43688 288 aa15.14■□□□□ 0.01
CLN3-239ENST00000628023 RHBDL1O75783 438 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms