RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NPHP4O75161 1426 aaPredicted RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 A0A0B4J2C4 111 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 C9JQL5 133 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 G3V3Q6 166 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ERI3O43414 337 aaKnown RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 OR2F2O95006 317 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 HMOX2P30519 316 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 UBE2MP61081 183 aaKnown RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ENDOGQ14249 297 aaKnown RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 MAJINQ3KP22 176 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 Q6ZSA8 131 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 CENPQQ7L2Z9 268 aaPredicted RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 TAS2R42Q7RTR8 314 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 SLC30A8Q8IWU4 369 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF567Q8N184 647 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ZDHHC22Q8N966 263 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 BPIFB6Q8NFQ5 453 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 OR5H2Q8NGV7 314 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 OR51F2Q8NH61 342 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 RNASE11Q8TAA1 199 aaKnown RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 FAM81AQ8TBF8 368 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ORAOV1Q8WV07 137 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 APH1AQ96BI3 265 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 RNF170Q96K19 258 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 PPP1R36Q96LQ0 422 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 TGS1Q96RS0 853 aaKnown RBP0.58□□□□□ -2.32
SCN1A-208ENST00000625916 LRRC19Q9H756 370 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 TUBA4BQ9H853 241 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF160Q9HCG1 818 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 TMEM38BQ9NVV0 291 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 MCUBQ9NWR8 336 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 MROH7Q68CQ1 1323 aa0.58□□□□□ -2.32
SCN1A-208ENST00000625916 NINLQ9Y2I6 1382 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 CACNA1GO43497 2377 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 ATAD2BQ9ULI0 1458 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 KBTBD11-OT1A0A1B0GTJ5 212 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 GOLGA8OA6NCC3 632 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 GOLGA8NF8WBI6 632 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 PSIP1O75475 530 aaKnown RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 UPK1BO75841 260 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 SMC2O95347 1197 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 HLA-HP01893 362 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 TRGV3P03979 118 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 OR4Q2P0C623 313 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 PTHLHP12272 177 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 HLA-GP17693 338 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 TEAD1P28347 426 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 GNRHRP30968 328 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 CFHR2P36980 270 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 C21orf59P57076 290 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 RAB11AP62491 216 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 ALKBH6Q3KRA9 238 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 CARD17Q5XLA6 110 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 TWF2Q6IBS0 349 aaKnown RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 LYPD6Q86Y78 171 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 AMN1Q8IY45 258 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 C3orf22Q8N5N4 141 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 DNAAF3Q8N9W5 541 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 OR8K1Q8NGG5 319 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 OR56A4Q8NGH8 313 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 BAALCQ8WXS3 180 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 SMARCD1Q96GM5 515 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 FAM19A4Q96LR4 140 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 Q96MT0 163 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 SCGB3A2Q96PL1 93 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 PLIN2Q99541 437 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 TMEM175Q9BSA9 504 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 THTPAQ9BU02 230 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 STMN4Q9H169 189 aaPredicted RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 TMEM100Q9NV29 134 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF443Q9Y2A4 671 aaPredicted RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 PPIL1Q9Y3C6 166 aa0.57□□□□□ -2.32
SCN1A-208ENST00000625916 MUC5BQ9HC84 5762 aaPredicted RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF608Q9ULD9 1512 aaPredicted RBP0.57□□□□□ -2.32
SCN1A-208ENST00000625916 LOXHD1Q8IVV2 1947 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 TRAV8-6A0A0B4J262 113 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 A0A1B0GU33 70 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 GMNCA6NCL1 334 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 OR2AG2A6NM03 316 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 ZNF729A6NN14 1252 aaPredicted RBP0.56□□□□□ -2.32
SCN1A-208ENST00000625916 LEUTXA8MZ59 168 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 LINC01619G3V211 115 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 K7ERS5 55 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 BCKDKO14874 412 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 TDP2O95551 362 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 KRT14P02533 472 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 KRT16P08779 473 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 SNRPAP09012 282 aaKnown RBP0.56□□□□□ -2.32
SCN1A-208ENST00000625916 MLNP12872 115 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 STOMP27105 288 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 CRABP2P29373 138 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 DHRS2Q13268 280 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 CEP55Q53EZ4 464 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 ARMC12Q5T9G4 340 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 SCD5Q86SK9 330 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 MSRB3Q8IXL7 192 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 GABRG1Q8N1C3 465 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 APOBEC3DQ96AK3 386 aaPredicted RBP0.56□□□□□ -2.32
SCN1A-208ENST00000625916 RAD51AP1Q96B01 352 aa0.56□□□□□ -2.32
SCN1A-208ENST00000625916 TXNDC17Q9BRA2 123 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms