RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 HOXA4Q00056 320 aaPredicted RBP13.47□□□□□ -0.25
LSM4-206ENST00000600289 MICBQ29980 383 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 WDR25Q64LD2 544 aaPredicted RBP13.47□□□□□ -0.25
LSM4-206ENST00000600289 SFRP4Q6FHJ7 346 aaPredicted RBP13.47□□□□□ -0.25
LSM4-206ENST00000600289 KCTD8Q6ZWB6 473 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 MOB3CQ70IA8 216 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 DEFB108BQ8NET1 73 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 RPL3LQ92901 407 aaKnown RBP13.47□□□□□ -0.25
LSM4-206ENST00000600289 C4orf36Q96KX1 117 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 DNTTIP1Q9H147 329 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 PLEKHA1Q9HB21 404 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 FRRS1LQ9P0K9 344 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 CTSZQ9UBR2 303 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 CLN8Q9UBY8 286 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 OPN4Q9UHM6 478 aa13.47□□□□□ -0.25
LSM4-206ENST00000600289 MGAM2Q2M2H8 2515 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 IGHV2-70DA0A0C4DH43 119 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 LOC107986453A0A1B0GWG9 222 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 PQLC2LA1A4F0 135 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 ANKRD61A6NGH8 418 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 H0YJX3 145 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 J3QLW9 94 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 AVPP01185 164 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 HTR1AP08908 422 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 LIMS3P0CW19 117 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 LIMS4P0CW20 117 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 PPIAL4GP0DN37 164 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 ZNF19P17023 458 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 DCKP27707 260 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 SCGB2A2Q13296 93 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 SMN1Q16637 294 aaKnown RBP13.46□□□□□ -0.25
LSM4-206ENST00000600289 ATPAF1Q5TC12 328 aaPredicted RBP13.46□□□□□ -0.25
LSM4-206ENST00000600289 STUMQ69YW2 141 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 LHFPL3Q86UP9 236 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 BOLLQ8N9W6 283 aaKnown RBP13.46□□□□□ -0.25
LSM4-206ENST00000600289 CNIH3Q8TBE1 160 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 FBLIM1Q8WUP2 373 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 PP6455Q8WZ26 134 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 AQP3Q92482 292 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 CHST5Q9GZS9 411 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 C7orf69Q9H7B7 122 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 MMP26Q9NRE1 261 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 ERVK-18Q9QC07 812 aa13.46□□□□□ -0.25
LSM4-206ENST00000600289 NKX1-2Q9UD57 310 aaPredicted RBP13.46□□□□□ -0.25
LSM4-206ENST00000600289 ERICH4A6NGS2 130 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 OR4C45A6NMZ5 311 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 ADAM20O43506 726 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 GATBO75879 557 aaKnown RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 GYPAP02724 150 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 ACAA1P09110 424 aaPredicted RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 PIPP12273 146 aaPredicted RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 MPZP25189 248 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 TGM4P49221 684 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 PAX8Q06710 450 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 ALKBH1Q13686 389 aaKnown RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 ODF4Q2M2E3 257 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 CD276Q5ZPR3 534 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 ZNF573Q86YE8 665 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 C8orf59Q8N0T1 100 aaPredicted RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 ZNF671Q8TAW3 534 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 RAB40AQ8WXH6 277 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 GPR173Q9NS66 373 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 RASL12Q9NYN1 266 aa13.45□□□□□ -0.26
LSM4-206ENST00000600289 DIMT1Q9UNQ2 313 aaKnown RBP13.45□□□□□ -0.26
LSM4-206ENST00000600289 LOC105371242A0A075B767 164 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 KIR2DS1A0A191URI9 304 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 J3QT63 122 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 NOS1APO75052 506 aaPredicted RBP13.44□□□□□ -0.26
LSM4-206ENST00000600289 HAGHLQ6PII5 290 aaPredicted RBP13.44□□□□□ -0.26
LSM4-206ENST00000600289 BTNL3Q6UXE8 466 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 UTS2BQ765I0 119 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 SLC36A1Q7Z2H8 476 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 POC1AQ8NBT0 407 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 NANPQ8TBE9 248 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 RPS4Y2Q8TD47 263 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 TFAP2CQ92754 450 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 MRI1Q9BV20 369 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 PKIBQ9C010 78 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 ISG20L2Q9H9L3 353 aaKnown RBP13.44□□□□□ -0.26
LSM4-206ENST00000600289 METRNQ9UJH8 293 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 HHLA2Q9UM44 414 aa13.44□□□□□ -0.26
LSM4-206ENST00000600289 CAB39Q9Y376 341 aaPredicted RBP13.44□□□□□ -0.26
LSM4-206ENST00000600289 IGHV3OR15-7A0A075B7D8 119 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 GPR37O15354 613 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 RHBDL1O75783 438 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 ECDO95905 644 aaPredicted RBP13.43□□□□□ -0.26
LSM4-206ENST00000600289 GNAO1P09471 354 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 CCDC159P0C7I6 412 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 PGA5P0DJD9 388 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 CNN3Q15417 329 aaKnown RBP13.43□□□□□ -0.26
LSM4-206ENST00000600289 UBE2V2Q15819 145 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 ZNF788Q6ZQV5 615 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 RDH10Q8IZV5 341 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 DNAAF1Q8NEP3 725 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 ANGPTL6Q8NI99 470 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 DMRTB1Q96MA1 342 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 WDR13Q9H1Z4 485 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 SMURF1Q9HCE7 757 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 PLCXD1Q9NUJ7 323 aa13.43□□□□□ -0.26
LSM4-206ENST00000600289 CNOT2Q9NZN8 540 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms