RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZNF787Q6DD87 383 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 OR2I1PQ8NGU4 316 aa18.25■□□□□ 0.51
UPF1-207ENST00000599848 NUMA1Q14980 2115 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 IGHV5-10-1A0A0J9YXX1 117 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 POU4F3Q15319 338 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 PRICKLE4Q2TBC4 344 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 FAM122CQ6P4D5 195 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 SCARB1Q8WTV0 552 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 GATA6Q92908 595 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 PIK3IP1Q96FE7 263 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 PRRC2BQ5JSZ5 2229 aaKnown RBP18.24■□□□□ 0.51
UPF1-207ENST00000599848 AHRRA9YTQ3 701 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 RPL12P30050 165 aaKnown RBP18.24■□□□□ 0.51
UPF1-207ENST00000599848 CDAP32320 146 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 CEACAM6P40199 344 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 ETV1P50549 477 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 FAHD1Q6P587 224 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 OR4D10Q8NGI6 311 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 RAB40CQ96S21 281 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 CYR61O00622 381 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 CA11O75493 328 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 TRAPPC2P0DI81 140 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 TRAPPC2BP0DI82 140 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 CALCRP30988 508 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 OR10K2Q6IF99 312 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 SLC2A8Q9NY64 477 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 COA4Q9NYJ1 87 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 OR1A1Q9P1Q5 309 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 UMAD1C9J7I0 102 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 PPP1R2P9O14990 202 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 POLR2IP36954 125 aaKnown RBP18.24■□□□□ 0.51
UPF1-207ENST00000599848 AMTP48728 403 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 GP2P55259 537 aaKnown RBP18.24■□□□□ 0.51
UPF1-207ENST00000599848 SPINK14Q6IE38 97 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 PIMREGQ9BSJ6 248 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 CES1P1Q9UKY3 287 aa18.24■□□□□ 0.51
UPF1-207ENST00000599848 EML2O95834 649 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 EPXP11678 715 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 CTGFP29279 349 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 SSTR2P30874 369 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 DRD3P35462 400 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 TMEM229BQ8NBD8 167 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 OR52I2Q8NH67 350 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 ADGRG7Q96K78 797 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 TMED3Q9Y3Q3 217 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 OR2M5A3KFT3 312 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 ERVFRD-1P60508 538 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 IZUMO4Q1ZYL8 232 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 GPR119Q8TDV5 335 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 ZCCHC14Q8WYQ9 949 aaKnown RBP18.23■□□□□ 0.51
UPF1-207ENST00000599848 SNRPGP15A8MWD9 76 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 SPRY1O43609 319 aaPredicted RBP18.23■□□□□ 0.51
UPF1-207ENST00000599848 DUS4LO95620 317 aaKnown RBP18.23■□□□□ 0.51
UPF1-207ENST00000599848 PGFP49763 221 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 CSAG2Q9Y5P2 127 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 XRCC3O43542 346 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 ZNF774Q6NX45 483 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 NRARPQ7Z6K4 114 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 CXorf67Q86X51 503 aaPredicted RBP18.23■□□□□ 0.51
UPF1-207ENST00000599848 OR10V1Q8NGI7 309 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 UQCC1Q9NVA1 299 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 CLEC2DQ9UHP7 191 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 ICAM5Q9UMF0 924 aa18.23■□□□□ 0.51
UPF1-207ENST00000599848 FAM221AA4D161 298 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 ZNF727A8MUV8 499 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 CTSVO60911 334 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 FCGR3BO75015 233 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 PDCD6O75340 191 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 MRPS11P82912 194 aaKnown RBP18.22■□□□□ 0.51
UPF1-207ENST00000599848 ALKAL2Q6UX46 152 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 BCDIN3DQ7Z5W3 292 aaKnown RBP18.22■□□□□ 0.51
UPF1-207ENST00000599848 LYSMD2Q8IV50 215 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 PSG11Q9UQ72 335 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 OR2T8A6NH00 312 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 F5H697 171 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 PJVKQ0ZLH3 352 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 CGB2Q6NT52 195 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 NUP37Q8NFH4 326 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 PITPNC1Q9UKF7 332 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 B4GALNT1Q00973 533 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 PAX5Q02548 391 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 KLRB1Q12918 225 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 ATP6V1FQ16864 119 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 OR1L6Q8NGR2 347 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 ZNF596Q8TC21 504 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 ETHE1O95571 254 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 CCL4P13236 92 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 GAB2Q9UQC2 676 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 MYO10Q9HD67 2058 aa18.22■□□□□ 0.51
UPF1-207ENST00000599848 GAB4Q2WGN9 574 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 PTPMT1Q8WUK0 201 aaPredicted RBP18.21■□□□□ 0.51
UPF1-207ENST00000599848 NUDCD2Q8WVJ2 157 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 NTNG2Q96CW9 530 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 HSD17B10Q99714 261 aaKnown RBP18.21■□□□□ 0.51
UPF1-207ENST00000599848 PNPP00491 289 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 LALBAP00709 142 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 SLC25A4P12235 298 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 MAGEA5P43359 124 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 FOXO1Q12778 655 aa18.21■□□□□ 0.51
UPF1-207ENST00000599848 LYG2Q86SG7 212 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms