RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 DIRAS2Q96HU8 199 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 PKIBQ9C010 78 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 ELL3Q9HB65 397 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-209ENST00000597423 FAIMQ9NVQ4 179 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 FBLN5Q9UBX5 448 aa13.01□□□□□ -0.33
TRIM28-209ENST00000597423 KMT2BQ9UMN6 2715 aaPredicted RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 LRP5LA4QPB2 252 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 CLDN25C9JDP6 229 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 PRSS44E7EML9 344 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 SCGNO76038 276 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 CSTBP04080 98 aaKnown RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 NAT2P11245 290 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 BMP4P12644 408 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 HAAOP46952 286 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 OR3A4PP47883 348 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 SRP9P49458 86 aaKnown RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 MMP15P51511 669 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF846Q147U1 533 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 EFNB3Q15768 340 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 FAM76BQ5HYJ3 339 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 DMRTC1Q5HYR2 192 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 METAP1DQ6UB28 335 aaPredicted RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 BAIAP2L2Q6UXY1 529 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 CDH24Q86UP0 819 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM200AQ86VY9 491 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 CELF2-AS1Q8N7Q2 184 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 OR51F2Q8NH61 342 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 C15orf40Q8WUR7 153 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 HPSE2Q8WWQ2 592 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 RFT1Q96AA3 541 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 MRPS24Q96EL2 167 aaKnown RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 URM1Q9BTM9 101 aaKnown RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 WDR12Q9GZL7 423 aaKnown RBP13□□□□□ -0.33
TRIM28-209ENST00000597423 OR51I2Q9H344 312 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 MS4A5Q9H3V2 200 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 PPP1R3EQ9H7J1 279 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 RHOFQ9HBH0 211 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 MSL2Q9HCI7 577 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 DIABLOQ9NR28 239 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 POLDIP2Q9Y2S7 368 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 HIVEP3Q5T1R4 2406 aa13□□□□□ -0.33
TRIM28-209ENST00000597423 A0A0B4J203 849 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 FABP12A6NFH5 140 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 H3BUI4 141 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 TPPPO94811 219 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 PLA2G2AP14555 144 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 PTBP1P26599 531 aaKnown RBP eCLIP12.99□□□□□ -0.33
TRIM28-209ENST00000597423 ASCL4Q6XD76 172 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 OR5D18Q8NGL1 313 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 OR5H6Q8NGV6 325 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 POM121Q96HA1 1249 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 EGLN1Q9GZT9 426 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 ABCG5Q9H222 651 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 IL36GQ9NZH8 169 aa12.99□□□□□ -0.33
TRIM28-209ENST00000597423 HEATR1Q9H583 2144 aaKnown RBP12.98□□□□□ -0.33
TRIM28-209ENST00000597423 A0A0A6YYH2 397 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM272A0A1B0GTI8 110 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 A6NJ64 397 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 TRAPPC2LH3BP13 241 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 C19orf84I3L1E1 186 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 J3QT63 122 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 M0R233 179 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 SPRY3O43610 288 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 GRPP07492 148 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 CHRM2P08172 466 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 GTF2F2P13984 249 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ELK1P19419 428 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ETV6P41212 452 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 CD200P41217 278 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ZP1P60852 638 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 SNRPD2P62316 118 aaKnown RBP12.98□□□□□ -0.33
TRIM28-209ENST00000597423 PITPNAQ00169 270 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 IL24Q13007 206 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 MSMPQ1L6U9 139 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 PCGF3Q3KNV8 242 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 SLC22A6Q4U2R8 563 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 RAB12Q6IQ22 244 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 HAGHLQ6PII5 290 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-209ENST00000597423 Q6ZR03 302 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 SLC25A26Q70HW3 274 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 CCDC190Q86UF4 302 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 LAX1Q8IWV1 398 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 Q8IYB0 196 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF611Q8N823 705 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ELMOD3Q96FG2 381 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ATG5Q9H1Y0 275 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 MIXL1Q9H2W2 232 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 DYNLRB1Q9NP97 96 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 RHBDL2Q9NX52 303 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 RALYQ9UKM9 306 aaKnown RBP12.98□□□□□ -0.33
TRIM28-209ENST00000597423 ZNF462Q96JM2 2506 aa12.98□□□□□ -0.33
TRIM28-209ENST00000597423 IGKV1-27A0A075B6S5 117 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 A6NNC1 897 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 F5H5P2 479 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 H0YL77 283 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 PYCARD-AS1I3L0S3 204 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 MLNRO43193 412 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 SIAH2O43255 324 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 CRTAPO75718 401 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-209ENST00000597423 HTR3BO95264 441 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms