RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 PELI1Q96FA3 418 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 CCL13Q99616 98 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 NUDT16L1Q9BRJ7 211 aaKnown RBP13.05□□□□□ -0.32
LIG3-215ENST00000592690 ZNF649Q9BS31 505 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 MRI1Q9BV20 369 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 ALG8Q9BVK2 526 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 PLEKHA1Q9HB21 404 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 SNTG1Q9NSN8 517 aa13.05□□□□□ -0.32
LIG3-215ENST00000592690 KIR2DS1A0A191URI9 304 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ANKRD61A6NGH8 418 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 J3QLW9 94 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 DVL1O14640 695 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 CASQ2O14958 399 aaPredicted RBP13.04□□□□□ -0.32
LIG3-215ENST00000592690 TCF21O43680 179 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 UBCP0CG48 685 aaKnown RBP13.04□□□□□ -0.32
LIG3-215ENST00000592690 ZNF19P17023 458 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ACTA2P62736 377 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ACTG2P63267 376 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 RAB40BQ12829 278 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 GALEQ14376 348 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ARMCX4Q5H9R4 360 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 KLF17Q5JT82 389 aaPredicted RBP13.04□□□□□ -0.32
LIG3-215ENST00000592690 OGFRL1Q5TC84 451 aaPredicted RBP13.04□□□□□ -0.32
LIG3-215ENST00000592690 STUMQ69YW2 141 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 FDX2Q6P4F2 183 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 BTNL3Q6UXE8 466 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 KCTD20Q7Z5Y7 419 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 CNIH3Q8TBE1 160 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 AQP3Q92482 292 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ADI1Q9BV57 179 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ISG20L2Q9H9L3 353 aaKnown RBP13.04□□□□□ -0.32
LIG3-215ENST00000592690 C8orf4Q9NR00 106 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 ERVK13-1Q9NX77 482 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 FRRS1LQ9P0K9 344 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 KAAG1Q9UBP8 84 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 DNAJB11Q9UBS4 358 aa13.04□□□□□ -0.32
LIG3-215ENST00000592690 PQLC2LA1A4F0 135 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 ENSAO43768 121 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 FADS2O95864 444 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 HTR1AP08908 422 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 SELLP14151 372 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 GLRA1P23415 457 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 ADARB1P78563 741 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 PHC2Q8IXK0 858 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 TRMT10AQ8TBZ6 339 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 NPRL2Q8WTW4 380 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 C22orf15Q8WYQ4 148 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 C12orf43Q96C57 262 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 SLC6A7Q99884 636 aa13.03□□□□□ -0.32
LIG3-215ENST00000592690 MRPS18AQ9NVS2 196 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 RPL36Q9Y3U8 105 aaKnown RBP13.03□□□□□ -0.32
LIG3-215ENST00000592690 ERICH4A6NGS2 130 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 SYNGR1O43759 233 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 HAAOP46952 286 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 SCGB2A2Q13296 93 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 UBE2V2Q15819 145 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 TTC23Q5W5X9 447 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 SLC36A1Q7Z2H8 476 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 CALHM1Q8IU99 346 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 SYS1Q8N2H4 156 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 DHRSXQ8N5I4 330 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 CCDC54Q8NEL0 328 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 OR10AC1Q8NH08 325 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 ANGPTL6Q8NI99 470 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 ZNF671Q8TAW3 534 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 TMEM158Q8WZ71 300 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 ST8SIA4Q92187 359 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 MRPL48Q96GC5 212 aaKnown RBP13.02□□□□□ -0.33
LIG3-215ENST00000592690 ZNF488Q96MN9 340 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 GAFA1Q96PS6 74 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 CHST5Q9GZS9 411 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 INPP5EQ9NRR6 644 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 NLKQ9UBE8 527 aa13.02□□□□□ -0.33
LIG3-215ENST00000592690 NKX1-2Q9UD57 310 aaPredicted RBP13.02□□□□□ -0.33
LIG3-215ENST00000592690 IGHV3OR16-10A0A075B7F0 116 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 TRAV40A0A0B4J280 105 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 OR4C45A6NMZ5 311 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 J3QT63 122 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 VENTXO95231 258 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 ISG15P05161 165 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 GNAO1P09471 354 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 LIMS3P0CW19 117 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 LIMS4P0CW20 117 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 IGHV4-38-2P0DP08 117 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 TGM4P49221 684 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 CCR9P51686 369 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 FGF12P61328 243 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 IKZF1Q13422 519 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 ALKBH1Q13686 389 aaKnown RBP13.01□□□□□ -0.33
LIG3-215ENST00000592690 KLHL22Q53GT1 634 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 ATPAF1Q5TC12 328 aaPredicted RBP13.01□□□□□ -0.33
LIG3-215ENST00000592690 TMEM244Q5VVB8 128 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 CD276Q5ZPR3 534 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 ZNF788Q6ZQV5 615 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 BTN2A1Q7KYR7 527 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 ZNF573Q86YE8 665 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 BATF2Q8N1L9 274 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 OR51A4Q8NGJ6 313 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 TMIGD2Q96BF3 282 aa13.01□□□□□ -0.33
LIG3-215ENST00000592690 UPRTQ96BW1 309 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms