RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PRDM14	Q9GZV8	571 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318	PBOV1	Q9GZY1	135 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318	CALHM2	Q9HA72	323 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318	TMEM138	Q9NPI0	162 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318	PLSCR2	Q9NRY7	297 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318	PLEKHA6	Q9Y2H5	1048 aa		13.46	□□□□□ -0.25
DDX39A-209	ENST00000589318		A0A0B4J203	849 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	C5orf52	A6NGY3	159 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	GOSR2	O14653	212 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	CD8A	P01732	235 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	IGHV3-9	P01782	118 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	IGHV2-70	P01814	119 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	CALCB	P10092	127 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	B4GALT1	P15291	398 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	HSD11B1	P28845	292 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	OTX1	P32242	354 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	KCNJ3	P48549	501 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	PRKX	P51817	358 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	SRSF4	Q08170	494 aa	Known RBP	13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	SMCO1	Q147U7	214 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	TMEM88	Q6PEY1	159 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318		Q6ZS92	163 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF546	Q86UE3	836 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	THRSP	Q92748	146 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	CMSS1	Q9BQ75	279 aa	Known RBP	13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	BCL2L14	Q9BZR8	327 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	NIT2	Q9NQR4	276 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF319	Q9P2F9	582 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	HHLA2	Q9UM44	414 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	SLC5A6	Q9Y289	635 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	ETV7	Q9Y603	341 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	P2RY10	O00398	339 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	CST2	P09228	141 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	PTGFR	P43088	359 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	SCAND1	P57086	179 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF121	P58317	390 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	NKAPL	Q5M9Q1	402 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	OR2W3	Q7Z3T1	314 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	NUFIP2	Q7Z417	695 aa	Known RBP	13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	TNFAIP8L1	Q8WVP5	186 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	ARL11	Q969Q4	196 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	EGLN1	Q9GZT9	426 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	MOB1A	Q9H8S9	216 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	PARPBP	Q9NWS1	579 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	UPB1	Q9UBR1	384 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	DHDH	Q9UQ10	334 aa		13.45	□□□□□ -0.26
DDX39A-209	ENST00000589318	SPTBN4	Q9H254	2564 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	IFITM5	A6NNB3	132 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	C1orf196	B1AJZ1	125 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	RPL36A-HNRNPH2	H7BZ11	118 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	AQP7	O14520	342 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	ST8SIA5	O15466	376 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNHIT1	O43257	154 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	LMX1B	O60663	402 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	MELTF	P08582	738 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	CSF1	P09603	554 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	SLC2A1	P11166	492 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	PTAFR	P25105	342 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	GRB2	P62993	217 aa	Known RBP	13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	BLOC1S1	P78537	153 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	PDZK1IP1	Q13113	114 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	TAF13	Q15543	124 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	TMEM244	Q5VVB8	128 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	C11orf88	Q6PI97	169 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF813	Q6ZN06	617 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	SLC22A24	Q8N4F4	322 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF433	Q8N7K0	673 aa	Predicted RBP	13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	RBMXL3	Q8N7X1	1067 aa	Known RBP	13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	C15orf54	Q8N8G6	183 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	CNTNAP3B	Q96NU0	1288 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	MRPL15	Q9P015	296 aa	Known RBP	13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	METTL1	Q9UBP6	276 aa	Known RBP	13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318		V9GY05	133 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	BSN	Q9UPA5	3926 aa		13.44	□□□□□ -0.26
DDX39A-209	ENST00000589318	ATM	Q13315	3056 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	CACNA1G	O43497	2377 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318		A0A1B0GTI1	187 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	SLC22A20	A6NK97	555 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318		E9PLN8	166 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	PYCARD-AS1	I3L0S3	204 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	FGF16	O43320	207 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	VSIG10L2	P0DP72	767 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	ABO	P16442	354 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	IGFBP3	P17936	291 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	FST	P19883	344 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	PTH2R	P49190	550 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	CX3CR1	P49238	355 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	SORD	Q00796	357 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	SSBP1	Q04837	148 aa	Known RBP	13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	TMEM69	Q5SWH9	247 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	FIP1L1	Q6UN15	594 aa	Known RBP	13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	STX12	Q86Y82	276 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	OR8B12	Q8NGG6	310 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	FGFBP3	Q8TAT2	258 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	RXFP4	Q8TDU9	374 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	CLCF1	Q9UBD9	225 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	PCDHB10	Q9UN67	800 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	MEX3A	A1L020	520 aa	Known RBP	13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	C5orf63	A6NC05	138 aa		13.43	□□□□□ -0.26
DDX39A-209	ENST00000589318	ZNF729	A6NN14	1252 aa	Predicted RBP	13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms