RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DNTTIP1Q9H147 329 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 SEMA6AQ9H2E6 1030 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 H2AFY2Q9P0M6 372 aaPredicted RBP16.82■□□□□ 0.28
SHMT1-209ENST00000582653 NLKQ9UBE8 527 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 GTF2A1LQ9UNN4 478 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 PIGLQ9Y2B2 252 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 TMEM14AQ9Y6G1 99 aa16.82■□□□□ 0.28
SHMT1-209ENST00000582653 A0A1W2PRD5 423 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 A0A1W2PRF3 423 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 A0A1W2PRM7 423 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 NKX6-3A6NJ46 265 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 OR2AT4A6NND4 320 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 ZAR1LA6NP61 321 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 SRSF10O75494 262 aaKnown RBP16.81■□□□□ 0.28
SHMT1-209ENST00000582653 IGHV4-59P01825 116 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 TTRP02766 147 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 GABRA2P47869 451 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 GNG3P63215 75 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 RIPPLY1Q0D2K3 151 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 C12orf73Q69YU5 71 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF322Q6U7Q0 402 aaPredicted RBP16.81■□□□□ 0.28
SHMT1-209ENST00000582653 PLEKHG7Q6ZR37 379 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 SLC35F2Q8IXU6 374 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 Q8N7P7 452 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 OR5A2Q8NGI9 324 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 TMEM163Q8TC26 289 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 MED30Q96HR3 178 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 DPAGT1Q9H3H5 408 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 ADGRL4Q9HBW9 690 aa16.81■□□□□ 0.28
SHMT1-209ENST00000582653 SLC25A10Q9UBX3 287 aaPredicted RBP16.81■□□□□ 0.28
SHMT1-209ENST00000582653 NUFIP1Q9UHK0 495 aaKnown RBP16.81■□□□□ 0.28
SHMT1-209ENST00000582653 IGKV1D-17A0A075B6S4 117 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 GPR137BO60478 399 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 ACAA1P09110 424 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-209ENST00000582653 NDUFB7P17568 137 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF829Q3KNS6 432 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-209ENST00000582653 PLCXD3Q63HM9 321 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 KDM4DQ6B0I6 523 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 HAGHLQ6PII5 290 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-209ENST00000582653 C1orf122Q6ZSJ8 110 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 CMTM4Q8IZR5 234 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 C8orf46Q8TAG6 207 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 AQP3Q92482 292 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 PRRG3Q9BZD7 231 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 ELL3Q9HB65 397 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-209ENST00000582653 CAB39Q9Y376 341 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-209ENST00000582653 FAM96BQ9Y3D0 163 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 AP4S1Q9Y587 144 aa16.8■□□□□ 0.28
SHMT1-209ENST00000582653 A6NIN4 97 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 SLC22A31A6NKX4 558 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 LOC110117498-PIK3R3F6TDL0 507 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 RNASEK-C17orf49H0YIS7 233 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 SIGLEC5O15389 551 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 PSG2P11465 335 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ATP6V1B1P15313 513 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 FASP25445 335 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 POLR2IP36954 125 aaKnown RBP16.79■□□□□ 0.28
SHMT1-209ENST00000582653 DEFA6Q01524 100 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 KLRD1Q13241 179 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 NXNL2Q5VZ03 156 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ZDHHC13Q8IUH4 622 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 PNKDQ8N490 385 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ZNRF1Q8ND25 227 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 LINC01006Q8NI28 216 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF671Q8TAW3 534 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 LRTOMTQ8WZ04 291 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ITFG2Q969R8 447 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF488Q96MN9 340 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 ENPP5Q9UJA9 477 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 RNF114Q9Y508 228 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 MAB21L2Q9Y586 359 aa16.79■□□□□ 0.28
SHMT1-209ENST00000582653 NRASP01111 189 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 GUCA2AQ02747 115 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 C1orf146Q5VVC0 180 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 GDPGP1Q6ZNW5 385 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 SSX6Q7RTT6 188 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 TBX5Q99593 518 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 GPR173Q9NS66 373 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 MRM2Q9UI43 246 aaKnown RBP16.78■□□□□ 0.28
SHMT1-209ENST00000582653 OR52A1Q9UKL2 312 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 R4GMQ9 66 aa16.78■□□□□ 0.28
SHMT1-209ENST00000582653 A0A1B0GTI1 187 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 OR5B21A6NL26 309 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 ZNF670-ZNF695F2Z2N8 137 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 DHRS3O75911 302 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 CLPXO76031 633 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 FBP1P09467 338 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 EEF1B2P24534 225 aaKnown RBP16.77■□□□□ 0.28
SHMT1-209ENST00000582653 KRTAP10-3P60369 221 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 BCL2L15Q5TBC7 163 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 ZBTB37Q5TC79 503 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 BRICD5Q6PL45 260 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 ELMOD2Q8IZ81 293 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 ZSCAN4Q8NAM6 433 aaPredicted RBP16.77■□□□□ 0.28
SHMT1-209ENST00000582653 OR51G2Q8NGK0 314 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 TNFRSF14Q92956 283 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 DUS3LQ96G46 650 aaKnown RBP16.77■□□□□ 0.28
SHMT1-209ENST00000582653 CIB1Q99828 191 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 GABARAPL1Q9H0R8 117 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 CLN6Q9NWW5 311 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms