RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NAT2P11245 290 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 HAAOP46952 286 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 QRFPP83859 136 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 HOXA4Q00056 320 aaPredicted RBP21.35■■□□□ 1.01
SHMT1-207ENST00000580002 MAB21L1Q13394 359 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 UNC119Q13432 240 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 MZT2AQ6P582 158 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 CDH26Q8IXH8 852 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 TMEM104Q8NE00 496 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 PLK3Q9H4B4 646 aa21.35■■□□□ 1.01
SHMT1-207ENST00000580002 A1L4Q6 167 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 PRSS44E7EML9 344 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 LDLRAD4O15165 306 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 SPRY3O43610 288 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 TMEM225BP0DP42 221 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 VSIG8P0DPA2 414 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 MST1LQ2TV78 715 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 CMTM4Q8IZR5 234 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 OR2Z1Q8NG97 314 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 ITFG2Q969R8 447 aa21.34■■□□□ 1.01
SHMT1-207ENST00000580002 SYNGR1O43759 233 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 CLDN1O95832 211 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 SERPINF1P36955 418 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 PDZK1IP1Q13113 114 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 ZNF672Q499Z4 452 aaPredicted RBP21.33■■□□□ 1.01
SHMT1-207ENST00000580002 CCDC190Q86UF4 302 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 MFSD4AQ8N468 514 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 FAM222BQ8WU58 562 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 TECTBQ96PL2 329 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 BANF2Q9H503 90 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 AKIP1Q9NQ31 210 aa21.33■■□□□ 1.01
SHMT1-207ENST00000580002 TENM4Q6N022 2769 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 GRPP07492 148 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 S100A5P33763 92 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 RIN1Q13671 783 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 SLC22A6Q4U2R8 563 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 PRAMEF6Q5VXH4 476 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 SLC25A26Q70HW3 274 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 IZUMO1Q8IYV9 350 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 OR13G1Q8NGZ3 307 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 ZNF488Q96MN9 340 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 OR51I2Q9H344 312 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 NEK6Q9HC98 313 aa21.33■■□□□ 1
SHMT1-207ENST00000580002 DCHS2Q6V1P9 2916 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 A0A1B0GWJ7 208 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 FAM25AB3EWG3 89 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 FAM25CB3EWG5 89 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 FAM25GB3EWG6 89 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 F8VVB4 439 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 F8VWA3 439 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 RHBDL1O75783 438 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 NPBWR2P48146 333 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 GNG3P63215 75 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 MPPED2Q15777 294 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 NKPD1Q17RQ9 610 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 CNIH2Q6PI25 160 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 HAGHLQ6PII5 290 aaPredicted RBP21.32■■□□□ 1
SHMT1-207ENST00000580002 ZNF611Q8N823 705 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 ACBD4Q8NC06 268 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 DIRAS2Q96HU8 199 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 MICU1Q9BPX6 476 aa21.32■■□□□ 1
SHMT1-207ENST00000580002 ELL3Q9HB65 397 aaPredicted RBP21.32■■□□□ 1
SHMT1-207ENST00000580002 EVX1P49640 407 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 ZNF154Q13106 437 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 MOGQ16653 247 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 ZNF826PQ6ZT77 177 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 PNLDC1Q8NA58 520 aaKnown RBP21.31■■□□□ 1
SHMT1-207ENST00000580002 OR4M1Q8NGD0 313 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 SLAMF9Q96A28 289 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 RTL8AQ9BWD3 113 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 KDM4BO94953 1096 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 SFTPBP07988 381 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 APOBEC3AP31941 199 aaPredicted RBP21.31■■□□□ 1
SHMT1-207ENST00000580002 SELENOVP59797 346 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 FAM76BQ5HYJ3 339 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 RTN4RL2Q86UN3 420 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 C11orf53Q8IXP5 236 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 OR51F2Q8NH61 342 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 CEP19Q96LK0 163 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 WDFY2Q96P53 400 aa21.31■■□□□ 1
SHMT1-207ENST00000580002 OR5B21A6NL26 309 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 TMEM14DPA8MWL7 114 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 J3QKU1 62 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 J3QRK9 145 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 BPNT1O95861 308 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 SERPINA2P20848 420 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 ZNF81P51508 661 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 SCCPDHQ8NBX0 429 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 ELMOD3Q96FG2 381 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 CXXC4Q9H2H0 198 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 UFSP2Q9NUQ7 469 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 RHBDL2Q9NX52 303 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 MTCH1Q9NZJ7 389 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 V9GYH0 126 aa21.3■■□□□ 1
SHMT1-207ENST00000580002 PLSCR5A0PG75 271 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 CLEC18AA5D8T8 446 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 CDIPTO14735 213 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 IGHV1-46P01743 117 aa21.29■■□□□ 1
SHMT1-207ENST00000580002 DYNC1I2Q13409 638 aaKnown RBP21.29■■□□□ 1
SHMT1-207ENST00000580002 CLEC18BQ6UXF7 455 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms