RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RBMS3Q6XE24 437 aaKnown RBP19.8■□□□□ 0.76
SHMT1-206ENST00000579558 FGFRL1Q8N441 504 aa19.8■□□□□ 0.76
SHMT1-206ENST00000579558 SIGLECL1Q8N7X8 197 aa19.8■□□□□ 0.76
SHMT1-206ENST00000579558 ZNF671Q8TAW3 534 aa19.8■□□□□ 0.76
SHMT1-206ENST00000579558 AQP3Q92482 292 aa19.8■□□□□ 0.76
SHMT1-206ENST00000579558 DAPL1A0PJW8 107 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 A6NIN4 97 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ZNF879B4DU55 563 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 H3BSH0 61 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 SYT7O43581 403 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 NDUFB3O43676 98 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 AMY2BP19961 511 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ISL1P61371 349 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 IKZF1Q13422 519 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 C11orf91Q3C1V1 193 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ATPAF1Q5TC12 328 aaPredicted RBP19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ENTHD1Q8IYW4 607 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 PCGF1Q9BSM1 259 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ADI1Q9BV57 179 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 DNTTIP1Q9H147 329 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 PLEKHA1Q9HB21 404 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 ESM1Q9NQ30 184 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 NLKQ9UBE8 527 aa19.79■□□□□ 0.76
SHMT1-206ENST00000579558 LOC100130705A0A1B0GUX0 176 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 J3QRE1 110 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 MPZL2O60487 215 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 PLATP00750 562 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 GABRB1P18505 474 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 TGM4P49221 684 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 ZSCAN26Q16670 478 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 TUSC1Q2TAM9 212 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 PRSS35Q8N3Z0 413 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 ZDHHC22Q8N966 263 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 TMIGD2Q96BF3 282 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 FAM118AQ9NWS6 357 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 PCDHGB1Q9Y5G3 927 aa19.78■□□□□ 0.76
SHMT1-206ENST00000579558 TOX4O94842 621 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 TFF1P04155 84 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 SFTPBP07988 381 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 SELLP14151 372 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 HAAOP46952 286 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 ZNF91Q05481 1191 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 CDONQ4KMG0 1287 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 LRRC10Q5BKY1 277 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 GPR157Q5UAW9 335 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 METTL11BQ5VVY1 283 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 ZNF788Q6ZQV5 615 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 KCTD20Q7Z5Y7 419 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 ZNF573Q86YE8 665 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 ANGPTL6Q8NI99 470 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 FAM216AQ8WUB2 273 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 LGALS12Q96DT0 336 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 WDFY2Q96P53 400 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 GAFA1Q96PS6 74 aa19.77■□□□□ 0.76
SHMT1-206ENST00000579558 RPUSD1Q9UJJ7 312 aaKnown RBP19.77■□□□□ 0.76
SHMT1-206ENST00000579558 EXOGQ9Y2C4 368 aaKnown RBP19.77■□□□□ 0.76
SHMT1-206ENST00000579558 PQLC2LA1A4F0 135 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 ANKRD61A6NGH8 418 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 OR2AT4A6NND4 320 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 J3QT63 122 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 SLC16A6O15403 523 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 UBCP0CG48 685 aaKnown RBP19.76■□□□□ 0.75
SHMT1-206ENST00000579558 DBTP11182 482 aaKnown RBP19.76■□□□□ 0.75
SHMT1-206ENST00000579558 KIR3DL2P43630 455 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 ACTG1P63261 375 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 IL13RA1P78552 427 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 C9orf139Q6ZV77 190 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 ACBD7Q8N6N7 88 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 CCDC54Q8NEL0 328 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 RHOXF1Q8NHV9 184 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 MED30Q96HR3 178 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 Q96MT0 163 aa19.76■□□□□ 0.75
SHMT1-206ENST00000579558 ZNF48Q96MX3 618 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-206ENST00000579558 LOC107986453A0A1B0GWG9 222 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 GPR37O15354 613 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 MMP9P14780 707 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 GABRA2P47869 451 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 OR12D2P58182 307 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 ARF6P62330 175 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 UBA52P62987 128 aaKnown RBP19.75■□□□□ 0.75
SHMT1-206ENST00000579558 BRD3OSQ6XYD6 125 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 POC1AQ8NBT0 407 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 OR2G2Q8NGZ5 317 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 TRMT10AQ8TBZ6 339 aaKnown RBP19.75■□□□□ 0.75
SHMT1-206ENST00000579558 RNF166Q96A37 237 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-206ENST00000579558 TBX15Q96SF7 602 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 SIRPDQ9H106 197 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 CNTD2Q9H8S5 307 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 SMPD3Q9NY59 655 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-206ENST00000579558 RASL12Q9NYN1 266 aa19.75■□□□□ 0.75
SHMT1-206ENST00000579558 SOX21Q9Y651 276 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-206ENST00000579558 SIGLEC5O15389 551 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 SYNGR1O43759 233 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 ACAA1P09110 424 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-206ENST00000579558 PSG2P11465 335 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 ACTA2P62736 377 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 ACTG2P63267 376 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 DGUOKQ16854 277 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 RDH10Q8IZV5 341 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 ZNF555Q8NEP9 628 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms