RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 Q96M66 194 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 METTL8Q9H825 291 aaKnown RBP19.9■□□□□ 0.78
VPS53-211ENST00000571805 HPF1Q9NWY4 346 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 CCDC163A0A0D9SF12 145 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 ACKR3P25106 362 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 B3GALT5-AS1P59052 145 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 AQP10Q96PS8 301 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 PRO3102Q9H379 93 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 GPR173Q9NS66 373 aa19.89■□□□□ 0.77
VPS53-211ENST00000571805 PMS2P1A4D2B8 440 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 C9J4A7 227 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 MSTNO14793 375 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 NTF4P34130 210 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 ZFP36L1Q07352 338 aaKnown RBP19.88■□□□□ 0.77
VPS53-211ENST00000571805 RAB32Q13637 225 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 RTL6Q6ICC9 239 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 DRAM2Q6UX65 266 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 SULF2Q8IWU5 870 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 TNRC18O15417 2968 aaPredicted RBP19.88■□□□□ 0.77
VPS53-211ENST00000571805 CCDC85CA6NKD9 419 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 DHRS7CA6NNS2 312 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 HOXA6P31267 233 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 PTGER4P35408 488 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 STK11Q15831 433 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 SEMA6DQ8NFY4 1073 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 OR51F2Q8NH61 342 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 SF3B5Q9BWJ5 86 aaKnown RBP19.88■□□□□ 0.77
VPS53-211ENST00000571805 ZNF701Q9NV72 531 aaPredicted RBP19.88■□□□□ 0.77
VPS53-211ENST00000571805 FRYLO94915 3013 aa19.88■□□□□ 0.77
VPS53-211ENST00000571805 NSG1A0A0A6YYJ2 146 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 TOR1AO14656 332 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 RRP8O43159 456 aaKnown RBP19.87■□□□□ 0.77
VPS53-211ENST00000571805 CFIP05156 583 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 FAM157CP0CG43 387 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 GABRR1P24046 479 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 HGFACQ04756 655 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 AIMP2Q13155 320 aaKnown RBP19.87■□□□□ 0.77
VPS53-211ENST00000571805 NKAPLQ5M9Q1 402 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 GALNTL5Q7Z4T8 443 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 OR2AE1Q8NHA4 323 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 TMED6Q8WW62 240 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 NARS2Q96I59 477 aaKnown RBP19.87■□□□□ 0.77
VPS53-211ENST00000571805 HDHD3Q9BSH5 251 aaPredicted RBP19.87■□□□□ 0.77
VPS53-211ENST00000571805 PLEKHJ1Q9NW61 149 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 VPS13AQ96RL7 3174 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 SYNGR3O43761 229 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 CTRB1P17538 263 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 TRA2AQ13595 282 aaKnown RBP eCLIP19.87■□□□□ 0.77
VPS53-211ENST00000571805 RAB35Q15286 201 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 CTRB2Q6GPI1 263 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 RPUSD3Q6P087 351 aaKnown RBP19.87■□□□□ 0.77
VPS53-211ENST00000571805 FAM219AQ8IW50 185 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 RNF141Q8WVD5 230 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 SLC6A15Q9H2J7 730 aa19.87■□□□□ 0.77
VPS53-211ENST00000571805 TMEM218A2RU14 115 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 YKT6O15498 198 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 SGCEO43556 437 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 KNG1P01042 644 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 CSTBP04080 98 aaKnown RBP19.86■□□□□ 0.77
VPS53-211ENST00000571805 SERPINA5P05154 406 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 HOXB5P09067 269 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 TMEM225BP0DP42 221 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 MTCP1P56278 107 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 RAC3P60763 192 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 PLEKHN1Q494U1 663 aaPredicted RBP19.86■□□□□ 0.77
VPS53-211ENST00000571805 FAM74A7A6NL05 159 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 DNPH1O43598 174 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 FAM74A3Q4VXF1 159 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 GPR137CQ8N3F9 429 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 NKX6-2Q9C056 277 aaPredicted RBP19.86■□□□□ 0.77
VPS53-211ENST00000571805 SLC5A7Q9GZV3 580 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 DNAJB11Q9UBS4 358 aa19.86■□□□□ 0.77
VPS53-211ENST00000571805 C14orf166Q9Y224 244 aaKnown RBP19.86■□□□□ 0.77
VPS53-211ENST00000571805 IGKV1-27A0A075B6S5 117 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 GJE1A6NN92 205 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ATG12O94817 140 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ZNF774Q6NX45 483 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ZNF585AQ6P3V2 769 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 MAFAQ8NHW3 353 aaPredicted RBP19.85■□□□□ 0.77
VPS53-211ENST00000571805 SPSB1Q96BD6 273 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ZNF2Q9BSG1 426 aaPredicted RBP19.85■□□□□ 0.77
VPS53-211ENST00000571805 DECR2Q9NUI1 292 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 CCDC187A0A096LP49 1063 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 A0A0G2JMM0 328 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 A0A1W2PPB8 328 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 A0A1W2PRS3 328 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 KIR3DP1A8MWS1 328 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ANGPTL7O43827 346 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 ACTL6AO96019 429 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 CST2P09228 141 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 FAM122CQ6P4D5 195 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 REEP6Q96HR9 211 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 METTL9Q9H1A3 318 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 CRLF2Q9HC73 371 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 GSKIPQ9P0R6 139 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 CNTRLQ7Z7A1 2325 aa19.85■□□□□ 0.77
VPS53-211ENST00000571805 NCKAP5O14513 1909 aa19.84■□□□□ 0.77
VPS53-211ENST00000571805 IFNA2P01563 188 aa19.84■□□□□ 0.77
VPS53-211ENST00000571805 AKR1C2P52895 323 aa19.84■□□□□ 0.77
VPS53-211ENST00000571805 AKR1C1Q04828 323 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms