RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZNF154Q13106 437 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 FGGYQ96C11 551 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 OR5M11Q96RB7 305 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 MGLLQ99685 303 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 REG4Q9BYZ8 158 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 RNF7Q9UBF6 113 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 NPTNQ9Y639 398 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 SIRT4Q9Y6E7 314 aaPredicted RBP17.34■□□□□ 0.37
VPS53-210ENST00000571456 TGP01266 2768 aa17.34■□□□□ 0.37
VPS53-210ENST00000571456 IGHV4-30-2A0A087WSY4 118 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 TRBV5-5A0A0J9YX44 114 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 A6NLC8 198 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 TMEM178BH3BS89 294 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 GRPP07492 148 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 OCMP0CE72 109 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 EMX1Q04741 257 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 LOXL1Q08397 574 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 KCNJ8Q15842 424 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 CEP78Q5JTW2 689 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 KCTD8Q6ZWB6 473 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 SPARTQ8N0X7 666 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 MUC20Q8N307 709 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 OR51A4Q8NGJ6 313 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 OR10AC1Q8NH08 325 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 ZNF671Q8TAW3 534 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 DVL3Q92997 716 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 TMEM106AQ96A25 262 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 ADAT3Q96EY9 351 aaPredicted RBP17.33■□□□□ 0.36
VPS53-210ENST00000571456 BPESC1Q9GZL8 116 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 ZCCHC4Q9H5U6 513 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 GPR173Q9NS66 373 aa17.33■□□□□ 0.36
VPS53-210ENST00000571456 A8MV72 311 aaPredicted RBP17.32■□□□□ 0.36
VPS53-210ENST00000571456 ZNF732B4DXR9 585 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 LYNX1G3V0Z9 82 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 LYNX1P0DP58 116 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 CPEP16870 476 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 ATF1P18846 271 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 USF1P22415 310 aaPredicted RBP17.32■□□□□ 0.36
VPS53-210ENST00000571456 GPM6AP51674 278 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 TMEM155Q4W5P6 130 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 SPRNQ5BIV9 151 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 UBE2UQ5VVX9 321 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 PRAMEF6Q5VXH4 476 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 LHFPL2Q6ZUX7 228 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 RGP1Q92546 391 aaPredicted RBP17.32■□□□□ 0.36
VPS53-210ENST00000571456 PHYHIPQ92561 330 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 BORCS8Q96FH0 119 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 NR1H4Q96RI1 486 aaPredicted RBP17.32■□□□□ 0.36
VPS53-210ENST00000571456 OR51I2Q9H344 312 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 VCX3AQ9NNX9 186 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 CKLFQ9UBR5 152 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 POLDIP2Q9Y2S7 368 aa17.32■□□□□ 0.36
VPS53-210ENST00000571456 PQLC2LA1A4F0 135 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 GPX5O75715 221 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 ACAA1P09110 424 aaPredicted RBP17.31■□□□□ 0.36
VPS53-210ENST00000571456 THBS2P35442 1172 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 MDH2P40926 338 aaKnown RBP17.31■□□□□ 0.36
VPS53-210ENST00000571456 RBP2P50120 134 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 ATP1B3P54709 279 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 BTG1P62324 171 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 MPPED2Q15777 294 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 UBE2V2Q15819 145 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 SPICQ8N5J4 248 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 ZFP41Q8N8Y5 198 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 PKIBQ9C010 78 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 ZNF696Q9H7X3 374 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 UFSP2Q9NUQ7 469 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 C1orf123Q9NWV4 160 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 WIPI2Q9Y4P8 454 aa17.31■□□□□ 0.36
VPS53-210ENST00000571456 PPIAL4EA0A075B759 164 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 A0A087WXM4 84 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 hCG_1807616A0A1W2PRN6 198 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 ZNF879B4DU55 563 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 PPIAL4DF5H284 164 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 H3BSH0 61 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 J3QT63 122 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 MAGEB3O15480 346 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 SULT1B1O43704 296 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 HSMCR30P0CW71 290 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 PPIAL4FP0DN26 164 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 RAB3AP20336 220 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 MAP2K4P45985 399 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 RPS11P62280 158 aaKnown RBP eCLIP17.3■□□□□ 0.36
VPS53-210ENST00000571456 PPP3R1P63098 170 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 ZNF529Q6P280 563 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 WDR82Q6UXN9 313 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 WDR86Q86TI4 376 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 SCCPDHQ8NBX0 429 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 ZNF420Q8TAQ5 688 aaPredicted RBP17.3■□□□□ 0.36
VPS53-210ENST00000571456 OPALINQ96PE5 141 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 CDC42EP3Q9UKI2 254 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 PPIAL4AQ9Y536 164 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 CACNG2Q9Y698 323 aa17.3■□□□□ 0.36
VPS53-210ENST00000571456 A6NIN4 97 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 CDIPTO14735 213 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 NDUFA2O43678 99 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 LMX1BO60663 402 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 LHBP01229 141 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 IGHV2-70P01814 119 aa17.29■□□□□ 0.36
VPS53-210ENST00000571456 ALDOBP05062 364 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms