RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PATJQ8NI35 1801 aa2.84□□□□□ -1.96
VPS35-208ENST00000568612 TNS2Q63HR2 1409 aa2.84□□□□□ -1.96
VPS35-208ENST00000568612 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 UBR2Q8IWV8 1755 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 A0A087WWC5 75 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 IGHV1-69-2A0A0G2JMI3 117 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TMEM272A0A1B0GTI8 110 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 LOC285095A0A1B0GVY8 99 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 NAP1L6A6NFF2 107 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 H0Y980 276 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 APOC4-APOC2K7ER74 178 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 RHODO00212 210 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC17A3O00476 420 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 NKX2-8O15522 239 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 PDE6DO43924 150 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CREBL2O60519 120 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 CDRT1O95170 752 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OR2C1O95371 312 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TNFRSF6BO95407 300 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CDS2O95674 445 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 KLKB1P03952 638 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DCNP07585 359 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 RFPL3SP0C7P2 107 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 PET100P0DJ07 73 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ESDP10768 282 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 AZU1P20160 251 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MMP11P24347 488 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ELAVL4P26378 380 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 CD27P26842 260 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CD1CP29017 333 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 KDELR2P33947 212 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 RPL3P39023 403 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 SOX3P41225 446 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CRYBB2P43320 205 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OR3A2P47893 321 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ART1P52961 327 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DVL1P1P54792 670 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 SNU13P55769 128 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC35A1P78382 337 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 H3F3AP84243 136 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CDK5Q00535 292 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 AKR1C1Q04828 323 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ARHGAP1Q07960 439 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 IL10RBQ08334 325 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ST3GAL4Q11206 333 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZP4Q12836 540 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MLLT11Q13015 90 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZNF154Q13106 437 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DHRS2Q13268 280 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZNF234Q14588 700 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 NFATC4Q14934 902 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TSNQ15631 228 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 LTC4SQ16873 150 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 QRICH1Q2TAL8 776 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TMEM176BQ3YBM2 270 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 MIDNQ504T8 468 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZNF585BQ52M93 769 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SPANXN3Q5MJ09 141 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC8B1Q6J4K2 584 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 FAM71F2Q6NXP2 309 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZNF549Q6P9A3 640 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 GLDNQ6ZMI3 551 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 Q6ZTK2 550 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CLEC20AQ6ZU45 233 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 Q7L0L9 218 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OLIG3Q7RTU3 272 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CPEB2Q7Z5Q1 589 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 CTU1Q7Z7A3 348 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 PIP4P1Q86T03 277 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TMPRSS12Q86WS5 348 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 APOBEC3FQ8IUX4 373 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 C9orf40Q8IXQ3 194 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 WDTC1Q8N5D0 677 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SMIM20Q8N5G0 67 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CSNK1A1LQ8N752 337 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 STPG4Q8N801 248 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ZFP41Q8N8Y5 198 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 NPEPL1Q8NDH3 523 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 PLPP5Q8NEB5 264 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 CADM4Q8NFZ8 388 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OR5A2Q8NGI9 324 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 OR1N2Q8NGR9 330 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MPLKIPQ8TAP9 179 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MARCH1Q8TCQ1 289 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 GPR119Q8TDV5 335 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 LRRC15Q8TF66 581 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 UBTD2Q8WUN7 234 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 FAM3CQ92520 227 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SUSD6Q92537 303 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DYRK2Q92630 601 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 DAZLQ92904 295 aaKnown RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 PIGTQ969N2 578 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TMEM18Q96B42 140 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 MOAP1Q96BY2 351 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 GALMQ96C23 342 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 SLC35G5Q96KT7 338 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 TNFRSF13CQ96RJ3 184 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 ASCL2Q99929 193 aa2.83□□□□□ -1.96
VPS35-208ENST00000568612 PSMG3Q9BT73 122 aaPredicted RBP2.83□□□□□ -1.96
VPS35-208ENST00000568612 GATA5Q9BWX5 397 aaPredicted RBP2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms