RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 BLMHQ13867 455 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 C1orf146Q5VVC0 180 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 KRT74Q7RTS7 529 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 HIST1H2AAQ96QV6 131 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 OR51I2Q9H344 312 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 DNAJB9Q9UBS3 223 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 LRP12Q9Y561 859 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 MAB21L2Q9Y586 359 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 TRBV23-1A0A0A0MS06 115 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 ZNF732B4DXR9 585 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 H3BUX3 64 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 E2F6O75461 281 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 CSF1P09603 554 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 PSG2P11465 335 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 POU1F1P28069 291 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 GABRA5P31644 462 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 MAP2K3P46734 347 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 GPM6AP51674 278 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 GNG3P63215 75 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 GINS1Q14691 196 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 ZNRF1Q8ND25 227 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 TMEM185AQ8NFB2 350 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 OR5D13Q8NGL4 314 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 C17orf50Q8WW18 174 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 SSX3Q99909 188 aa12.17□□□□□ -0.46
CLN3-236ENST00000568558 SF3B6Q9Y3B4 125 aaKnown RBP12.17□□□□□ -0.46
CLN3-236ENST00000568558 A0A0U1RQV5 110 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 H0YAE9 185 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 HOXB6P17509 224 aaKnown RBP12.16□□□□□ -0.46
CLN3-236ENST00000568558 ALOX5APP20292 161 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 SLC2A5P22732 501 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 EFNB2P52799 333 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 HERPUD1Q15011 391 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 CEACAM21Q3KPI0 293 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 CEP78Q5JTW2 689 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 SLC35D3Q5M8T2 416 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 CCDC121Q6ZUS5 278 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 KRT77Q7Z794 578 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 CPOQ8IVL8 374 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 FAM185AQ8N0U4 392 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 BBS1Q8NFJ9 593 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 OR51G2Q8NGK0 314 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 PPP1R35Q8TAP8 253 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 FAM81AQ8TBF8 368 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 SDSLQ96GA7 329 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 AJUBAQ96IF1 538 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 MEGF9Q9H1U4 602 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 YY1AP1Q9H869 796 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 LAMP5Q9UJQ1 280 aa12.16□□□□□ -0.46
CLN3-236ENST00000568558 ACOD1A6NK06 481 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 OR5B21A6NL26 309 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 ANGPTL7O43827 346 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 HMGN1P05114 100 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 OSMP13725 252 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 KIR2DS4P43632 304 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 RPS7P62081 194 aaKnown RBP12.15□□□□□ -0.46
CLN3-236ENST00000568558 CDK5Q00535 292 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 ATP6AP1Q15904 470 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 LY6EQ16553 131 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 LRRC75BQ2VPJ9 315 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 DMRTC1Q5HYR2 192 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 CRIP3Q6Q6R5 217 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 Q6ZTK2 550 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 OR5A2Q8NGI9 324 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 ZNF671Q8TAW3 534 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 AQP3Q92482 292 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 RORBQ92753 470 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 ITFG2Q969R8 447 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 FAM234AQ9H0X4 552 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 C19orf12Q9NSK7 152 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 FAM206AQ9NX38 181 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 SIGLEC9Q9Y336 463 aa12.15□□□□□ -0.46
CLN3-236ENST00000568558 TMEM269A0A1B0GVZ9 245 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 PSMD9O00233 223 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 CIB2O75838 187 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 IGLV3-1P01715 115 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 ATP6V1B1P15313 513 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 CAPZA1P52907 286 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 HCCSP53701 268 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 RIPPLY1Q0D2K3 151 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 AANATQ16613 207 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 KCTD18Q6PI47 426 aaPredicted RBP12.14□□□□□ -0.47
CLN3-236ENST00000568558 C11orf88Q6PI97 169 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 HAGHLQ6PII5 290 aaPredicted RBP12.14□□□□□ -0.47
CLN3-236ENST00000568558 DEGS2Q6QHC5 323 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 THAP5Q7Z6K1 395 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 AMIGO2Q86SJ2 522 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 MKXQ8IYA7 352 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 OR4C13Q8NGP0 309 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 OR5K1Q8NHB7 308 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 YIPF3Q9GZM5 350 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 RANBP3Q9H6Z4 567 aaPredicted RBP12.14□□□□□ -0.47
CLN3-236ENST00000568558 RASL12Q9NYN1 266 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 DNAH3Q8TD57 4116 aa12.14□□□□□ -0.47
CLN3-236ENST00000568558 MTRF1O75570 445 aaKnown RBP12.13□□□□□ -0.47
CLN3-236ENST00000568558 FAHP16930 419 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 PAX6P26367 422 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 DAPP51397 102 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 APOFQ13790 326 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 SMIM21Q3B7S5 101 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms