RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OSBPL10Q9BXB5 764 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 MOB1AQ9H8S9 216 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 ACOXLQ9NUZ1 547 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 MRM2Q9UI43 246 aaKnown RBP17.11■□□□□ 0.33
CLN3-219ENST00000565778 SNX5Q9Y5X3 404 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 KPTNQ9Y664 436 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 TENM1Q9UKZ4 2725 aa17.11■□□□□ 0.33
CLN3-219ENST00000565778 OR5B21A6NL26 309 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 OR2AT4A6NND4 320 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 SRSF10O75494 262 aaKnown RBP17.1■□□□□ 0.33
CLN3-219ENST00000565778 RPP14O95059 124 aaKnown RBP17.1■□□□□ 0.33
CLN3-219ENST00000565778 KRT8P05787 483 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 SELLP14151 372 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 HTR1FP30939 366 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 IL13RA1P78552 427 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 HAGHLQ6PII5 290 aaPredicted RBP17.1■□□□□ 0.33
CLN3-219ENST00000565778 VMO1Q7Z5L0 202 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 ELMOD2Q8IZ81 293 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 CMTM4Q8IZR5 234 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 YIPF7Q8N8F6 280 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 PYDC1Q8WXC3 89 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 AQP3Q92482 292 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 RBM4BQ9BQ04 359 aaKnown RBP17.1■□□□□ 0.33
CLN3-219ENST00000565778 DCTN5Q9BTE1 182 aa17.1■□□□□ 0.33
CLN3-219ENST00000565778 ACAA1P09110 424 aaPredicted RBP17.09■□□□□ 0.33
CLN3-219ENST00000565778 OR2T7P0C7T2 308 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 NDUFB7P17568 137 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 CLVS2Q5SYC1 327 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 ASRGL1Q7L266 308 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 OR8J1Q8NGP2 316 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 OR2T27Q8NH04 317 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 SGMS2Q8NHU3 365 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 TAF15Q92804 592 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-219ENST00000565778 DMRTB1Q96MA1 342 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 GAFA1Q96PS6 74 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 ZNF747Q9BV97 191 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 GABARAPL3Q9BY60 117 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 SLC25A10Q9UBX3 287 aaPredicted RBP17.09■□□□□ 0.33
CLN3-219ENST00000565778 SLC22A13Q9Y226 551 aa17.09■□□□□ 0.33
CLN3-219ENST00000565778 A0A1B0GVI7 797 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 A0A1W2PQL4 384 aaPredicted RBP17.08■□□□□ 0.32
CLN3-219ENST00000565778 A6NIN4 97 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 SIGLEC5O15389 551 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 APOL3O95236 402 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 CRYBA1P05813 215 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 PSG2P11465 335 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 DGUOKQ16854 277 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 SSX6Q7RTT6 188 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 OR10H4Q8NGA5 316 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 OR14K1Q8NGZ2 314 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 GPR173Q9NS66 373 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 RASL12Q9NYN1 266 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 V9GYS6 101 aa17.08■□□□□ 0.32
CLN3-219ENST00000565778 A0A1B0GTI1 187 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 METTL15A6NJ78 407 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 DLGAP1O14490 977 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 MELTFP08582 738 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 CDC42P60953 191 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 ODF4Q2M2E3 257 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 CCDC121Q6ZUS5 278 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 ZNF573Q86YE8 665 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 TBC1D15Q8TC07 691 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 RFKQ969G6 155 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 EME1Q96AY2 570 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 UNKLQ9H9P5 680 aaKnown RBP17.07■□□□□ 0.32
CLN3-219ENST00000565778 FAM96BQ9Y3D0 163 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 ORC6Q9Y5N6 252 aa17.07■□□□□ 0.32
CLN3-219ENST00000565778 IGKV1D-17A0A075B6S4 117 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 A0A1W2PQ09 198 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 FAM181BA6NEQ2 426 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 OMGP23515 440 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 HAAOP46952 286 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 CAV3P56539 151 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 FIP1L1Q6UN15 594 aaKnown RBP17.06■□□□□ 0.32
CLN3-219ENST00000565778 SHISA2Q6UWI4 295 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 KIR3DL3Q8N743 410 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 ZNRF1Q8ND25 227 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 C8orf46Q8TAG6 207 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 UBE2FQ969M7 185 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 ADI1Q9BV57 179 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 SIRT7Q9NRC8 400 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 IMPAD1Q9NX62 359 aa17.06■□□□□ 0.32
CLN3-219ENST00000565778 A0A0U1RQK1 487 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 POM121CA8CG34 1229 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 CAPZA1P52907 286 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 PRB3Q04118 309 aaPredicted RBP17.05■□□□□ 0.32
CLN3-219ENST00000565778 TMED1Q13445 227 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 KPNB1Q14974 876 aaKnown RBP17.05■□□□□ 0.32
CLN3-219ENST00000565778 TMEM42Q69YG0 159 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 TMEM86BQ8N661 226 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 TMEM185AQ8NFB2 350 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 SSMEM1Q8WWF3 244 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 TRUB1Q8WWH5 349 aaKnown RBP17.05■□□□□ 0.32
CLN3-219ENST00000565778 ZNF488Q96MN9 340 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 CHIAQ9BZP6 476 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 MAB21L2Q9Y586 359 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 POMT1Q9Y6A1 747 aa17.05■□□□□ 0.32
CLN3-219ENST00000565778 RFPL4AA6NLU0 287 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 RFPL4AL1F8VTS6 287 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 H3BSH0 61 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms