RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PPIAL4AQ9Y536 164 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 DENRO43583 198 aaKnown RBP14.48□□□□□ -0.09
CLN3-217ENST00000565354 SPRY1O43609 319 aaPredicted RBP14.48□□□□□ -0.09
CLN3-217ENST00000565354 ZFPL1O95159 310 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 ZNF205O95201 554 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 IGHV2-70P01814 119 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 CRHBPP24387 322 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 MDH2P40926 338 aaKnown RBP14.48□□□□□ -0.09
CLN3-217ENST00000565354 SLC35A2P78381 396 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 ZNF826PQ6ZT77 177 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 WDR86Q86TI4 376 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 NANOGP1Q8N7R0 232 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 OR10AC1Q8NH08 325 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 TRMT10AQ8TBZ6 339 aaKnown RBP14.48□□□□□ -0.09
CLN3-217ENST00000565354 NPRL2Q8WTW4 380 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 LRRC29Q8WV35 223 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 PP6455Q8WZ26 134 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 RPL3LQ92901 407 aaKnown RBP14.48□□□□□ -0.09
CLN3-217ENST00000565354 FGGYQ96C11 551 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 TECTBQ96PL2 329 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 PCDHGB5Q9Y5G0 923 aa14.48□□□□□ -0.09
CLN3-217ENST00000565354 PNMA8CA0A1B0GUJ8 204 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 FAM230AA0A1W2PPH8 454 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 CDIPTO14735 213 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 WNT9BO14905 357 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 ZMYND11Q15326 602 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 TMEM155Q4W5P6 130 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 TMEM42Q69YG0 159 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 XAF1Q6GPH4 301 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 KRT74Q7RTS7 529 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 ZFP41Q8N8Y5 198 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 OR51A4Q8NGJ6 313 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 SMIM19Q96E16 107 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 CDCA4Q9BXL8 241 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 CHST5Q9GZS9 411 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 ZNF665Q9H7R5 613 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 NEK6Q9HC98 313 aa14.47□□□□□ -0.09
CLN3-217ENST00000565354 PAK1IP1Q9NWT1 392 aaPredicted RBP14.47□□□□□ -0.09
CLN3-217ENST00000565354 OGG1O15527 345 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 TCF21O43680 179 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 LALBAP00709 142 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 MT-ND2P03891 347 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 CD2P06729 351 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 IL2RGP31785 369 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 CD80P33681 288 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 MED22Q15528 200 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 KCNJ8Q15842 424 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 FAM201AQ5SY85 155 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 RNLSQ5VYX0 342 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 HAGHLQ6PII5 290 aaPredicted RBP14.46□□□□□ -0.09
CLN3-217ENST00000565354 LRRC28Q86X40 367 aaPredicted RBP14.46□□□□□ -0.09
CLN3-217ENST00000565354 SCCPDHQ8NBX0 429 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 DEFB108BQ8NET1 73 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 GPR148Q8TDV2 347 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 SGCDQ92629 289 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 ADAT3Q96EY9 351 aaPredicted RBP14.46□□□□□ -0.09
CLN3-217ENST00000565354 BORCS8Q96FH0 119 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 C1orf159Q96HA4 380 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 DUSP21Q9H596 190 aa14.46□□□□□ -0.09
CLN3-217ENST00000565354 METTL17Q9H7H0 456 aaPredicted RBP14.46□□□□□ -0.09
CLN3-217ENST00000565354 C3orf80F5H4A9 247 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 TGFAP01135 160 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 CFPP27918 469 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 HAAOP46952 286 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 SOX2P48431 317 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 FUT6P51993 359 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 GMFBP60983 142 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 CR1LQ2VPA4 569 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 SFRP4Q6FHJ7 346 aaPredicted RBP14.45□□□□□ -0.1
CLN3-217ENST00000565354 WDR82Q6UXN9 313 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 C12orf54Q6X4T0 127 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 PRSS48Q7RTY5 328 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 ZNF573Q86YE8 665 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 C19orf18Q8NEA5 215 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 OR10Z1Q8NGY1 313 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 ZNF671Q8TAW3 534 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 FGF23Q9GZV9 251 aaPredicted RBP14.45□□□□□ -0.1
CLN3-217ENST00000565354 TLNRD1Q9H1K6 362 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 ZNF281Q9Y2X9 895 aa14.45□□□□□ -0.1
CLN3-217ENST00000565354 TRAV38-1A0A0B4J264 116 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 OOEPA6NGQ2 149 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 LGALS8O00214 317 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 IGHV2-5P01817 119 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 RPS2P15880 293 aaKnown RBP14.44□□□□□ -0.1
CLN3-217ENST00000565354 ATF1P18846 271 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 CELP19835 753 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 PRKACBP22694 351 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 ATP1B3P54709 279 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 SPHARQ15513 63 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 UBE2V2Q15819 145 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 FAM76BQ5HYJ3 339 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 DMKNQ6E0U4 476 aaPredicted RBP14.44□□□□□ -0.1
CLN3-217ENST00000565354 UTS2BQ765I0 119 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 SERPINA12Q8IW75 414 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 C11orf53Q8IXP5 236 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 GCSAMQ8N6F7 178 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 LINC01356Q8N9X3 169 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 ZNF485Q8NCK3 441 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 OR5D14Q8NGL3 314 aa14.44□□□□□ -0.1
CLN3-217ENST00000565354 OR13C9Q8NGT0 318 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms