RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TEX38Q6PEX7 206 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 C17orf82Q86X59 251 aaPredicted RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 OR13D1Q8NGV5 346 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 ADGRG7Q96K78 797 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 GPR87Q9BY21 358 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 FSCN3Q9NQT6 498 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 SEMA5BQ9P283 1151 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 OR4C45A6NMZ5 311 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 DANCRP0C864 163 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 OR5H8P0DN80 308 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 PI3P19957 117 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 CCKBRP32239 447 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 PPP1CCP36873 323 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 RPS27P42677 84 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 DLK1P80370 383 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 HAGHQ16775 308 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 ASPHD2Q6ICH7 369 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 PEG10Q86TG7 708 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 FJX1Q86VR8 437 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 NPEPL1Q8NDH3 523 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RCBTB1Q8NDN9 531 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RNASEH2CQ8TDP1 164 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 TSEN15Q8WW01 171 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 MCHR2Q969V1 340 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 CMBLQ96DG6 245 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 TSSK2Q96PF2 358 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 NCOR1P1Q9H4R4 102 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 METTL8Q9H825 291 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 SLC17A5Q9NRA2 495 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 FLRT3Q9NZU0 649 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 PADI1Q9ULC6 663 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 JTBO76095 146 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 SERPINA2P20848 420 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 GPR3P46089 330 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 OR3A1P47881 315 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 TMEM33P57088 247 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 FAM3AP98173 230 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RAB35Q15286 201 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 ANKRD55Q3KP44 614 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 SLC22A25Q6T423 547 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 BTNL3Q6UXE8 466 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 ZNF550Q7Z398 422 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 TRAPPC6BQ86SZ2 158 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 SLC25A45Q8N413 288 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 APCDD1LQ8NCL9 501 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 C16orf52Q8NHV5 167 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 ADAMTS18Q8TE60 1221 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RASD2Q96D21 266 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 OR51B6Q9H340 312 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RXFP3Q9NSD7 469 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 DNAJB12Q9NXW2 375 aaKnown RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 CGGBP1Q9UFW8 167 aaPredicted RBP11.75□□□□□ -0.53
CLK3-206ENST00000562078 IKZF2Q9UKS7 526 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 RAB22AQ9UL26 194 aa11.75□□□□□ -0.53
CLK3-206ENST00000562078 ASCC3Q8N3C0 2202 aaKnown RBP11.74□□□□□ -0.53
CLK3-206ENST00000562078 FRYLO94915 3013 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 A0A1B0GWA3 101 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 WIPF3A6NGB9 483 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 MASP2O00187 686 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 TP53I11O14683 189 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 TCF21O43680 179 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 PRH1P02810 166 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 TACSTD2P09758 323 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 GIMD1P0DJR0 217 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 PNLIPP16233 465 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 RPL12P30050 165 aaKnown RBP11.74□□□□□ -0.53
CLK3-206ENST00000562078 FCGR2CP31995 323 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 OR1D5P58170 312 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 RBX1P62877 108 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 GLYATL3Q5SZD4 288 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 ZNF774Q6NX45 483 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 OGFOD3Q6PK18 319 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 CLEC18BQ6UXF7 455 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 NEK7Q8TDX7 302 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 ADAD1Q96M93 576 aaKnown RBP11.74□□□□□ -0.53
CLK3-206ENST00000562078 PBDC1Q9BVG4 233 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 SLC26A1Q9H2B4 701 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 LRIT1Q9P2V4 623 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 A0A0B4J2E0 115 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 A0A1B0GX12 115 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 PRKNO60260 465 aaPredicted RBP11.74□□□□□ -0.53
CLK3-206ENST00000562078 ABHD16AO95870 558 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 CT45A8P0DMV1 189 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 CT45A9P0DMV2 189 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 DMDP11532 3685 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 SLC35A1P78382 337 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 HERPUD1Q15011 391 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 CT45A2Q5DJT8 189 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 AADACL3Q5VUY0 350 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 FAM166AQ6J272 317 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 MDGA2Q7Z553 956 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 TMEM183AQ8IXX5 376 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 SLC35G3Q8N808 338 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 POC1AQ8NBT0 407 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 TMEM230Q96A57 120 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 FAM210BQ96KR6 192 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 CCNL2Q96S94 520 aaPredicted RBP11.74□□□□□ -0.53
CLK3-206ENST00000562078 SYT3Q9BQG1 590 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 OR10A5Q9H207 317 aa11.74□□□□□ -0.53
CLK3-206ENST00000562078 RAB18Q9NP72 206 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms