RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RP1L1Q8IWN7 2480 aaPredicted RBP10.01□□□□□ -0.81
LDLR-208ENST00000558518 IGHV3-15A0A0B4J1V0 119 aa10□□□□□ -0.81
LDLR-208ENST00000558518 A0A1W2PQF6 199 aa10□□□□□ -0.81
LDLR-208ENST00000558518 ZNF705GA8MUZ8 300 aaPredicted RBP10□□□□□ -0.81
LDLR-208ENST00000558518 PHF1O43189 567 aaPredicted RBP10□□□□□ -0.81
LDLR-208ENST00000558518 JTBO76095 146 aa10□□□□□ -0.81
LDLR-208ENST00000558518 FCGR3AP08637 254 aa10□□□□□ -0.81
LDLR-208ENST00000558518 OR5AC1P0C628 307 aa10□□□□□ -0.81
LDLR-208ENST00000558518 CPEB4Q17RY0 729 aaKnown RBP eCLIP10□□□□□ -0.81
LDLR-208ENST00000558518 OR56B1Q8NGI3 324 aa10□□□□□ -0.81
LDLR-208ENST00000558518 PRAMEF26H0Y7S4 382 aa10□□□□□ -0.81
LDLR-208ENST00000558518 EPHA1P21709 976 aa10□□□□□ -0.81
LDLR-208ENST00000558518 SLC6A8P48029 635 aa10□□□□□ -0.81
LDLR-208ENST00000558518 SULT1A2P50226 295 aa10□□□□□ -0.81
LDLR-208ENST00000558518 ROM1Q03395 351 aa10□□□□□ -0.81
LDLR-208ENST00000558518 SAT2Q96F10 170 aaPredicted RBP10□□□□□ -0.81
LDLR-208ENST00000558518 GPR173Q9NS66 373 aa10□□□□□ -0.81
LDLR-208ENST00000558518 FAM24AA6NFZ4 105 aa10□□□□□ -0.81
LDLR-208ENST00000558518 DHRS7CA6NNS2 312 aa10□□□□□ -0.81
LDLR-208ENST00000558518 CD63P08962 238 aa10□□□□□ -0.81
LDLR-208ENST00000558518 NAAAQ02083 359 aa10□□□□□ -0.81
LDLR-208ENST00000558518 C1orf100Q5SVJ3 147 aa10□□□□□ -0.81
LDLR-208ENST00000558518 PRAMEF20Q5VT98 475 aa10□□□□□ -0.81
LDLR-208ENST00000558518 C9orf40Q8IXQ3 194 aa10□□□□□ -0.81
LDLR-208ENST00000558518 NECAP1Q8NC96 275 aa10□□□□□ -0.81
LDLR-208ENST00000558518 OR2G3Q8NGZ4 309 aa10□□□□□ -0.81
LDLR-208ENST00000558518 OR2AE1Q8NHA4 323 aa10□□□□□ -0.81
LDLR-208ENST00000558518 ZNF519Q8TB69 540 aa10□□□□□ -0.81
LDLR-208ENST00000558518 SMIM8Q96KF7 97 aa10□□□□□ -0.81
LDLR-208ENST00000558518 TCEAL7Q9BRU2 100 aa10□□□□□ -0.81
LDLR-208ENST00000558518 CUTCQ9NTM9 273 aa10□□□□□ -0.81
LDLR-208ENST00000558518 KCNIP3Q9Y2W7 256 aa10□□□□□ -0.81
LDLR-208ENST00000558518 LIPGQ9Y5X9 500 aa10□□□□□ -0.81
LDLR-208ENST00000558518 A6NCN8 305 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 FPR2P25090 351 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 CHATP28329 748 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 RAB5CP51148 216 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 HSD17B7P56937 341 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 NKX6-1P78426 367 aaPredicted RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 CCL20P78556 96 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 RUNX1Q01196 453 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 DTWD2Q8NBA8 298 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 POC1AQ8NBT0 407 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 MR1Q95460 341 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 SLC46A1Q96NT5 459 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 OCSTAMPQ9BR26 566 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 RBM24Q9BX46 236 aaKnown RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 LANCL2Q9NS86 450 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 TGIF2-C20orf24A0A0A6YYL0 155 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 ZNF726A6NNF4 738 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 UBE2CO00762 179 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 PHOX2AO14813 284 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 LDLRAD4O15165 306 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 TMEM127O75204 238 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 HPNP05981 417 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 DBHP09172 617 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 OR5H8P0DN80 308 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 PNLIPP16233 465 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 FCARP24071 287 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 FOXF1Q12946 379 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 KISS1Q15726 138 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 BTNL8Q6UX41 500 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 H1FNTQ75WM6 255 aaPredicted RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 OR52M1Q8NGK5 317 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 RNASE11Q8TAA1 199 aaKnown RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 NEK7Q8TDX7 302 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 AQP10Q96PS8 301 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 ZNF160Q9HCG1 818 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 GAR1Q9NY12 217 aaKnown RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 DOK5Q9P104 306 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 TRANK1O15050 2925 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 ZFP92A6NM28 416 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 ZNF724A8MTY0 619 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 WRBO00258 174 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 SCAF4O95104 1147 aaKnown RBP9.99□□□□□ -0.81
LDLR-208ENST00000558518 GABRA4P48169 554 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 SPEM2Q0P670 501 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 PYY3Q5JQD4 70 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 PHF19Q5T6S3 580 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 SPNS3Q6ZMD2 512 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 GRINAQ7Z429 371 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 OR1J1Q8NGS3 322 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 PBDC1Q9BVG4 233 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 ADAM19Q9H013 955 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 TMPRSS5Q9H3S3 457 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 WNT16Q9UBV4 365 aa9.99□□□□□ -0.81
LDLR-208ENST00000558518 MS4A18H0YCH9 400 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 GABREP78334 506 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 PPA1Q15181 289 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 MS4A18Q3C1V0 323 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 Q7L0L9 218 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 GKN2Q86XP6 184 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 ARRDC1Q8N5I2 433 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 RTN4IP1Q8WWV3 396 aaPredicted RBP9.98□□□□□ -0.81
LDLR-208ENST00000558518 INTS12Q96CB8 462 aaKnown RBP9.98□□□□□ -0.81
LDLR-208ENST00000558518 CLDN16Q9Y5I7 305 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 VSTM2BA6NLU5 285 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 MBPP02686 304 aaPredicted RBP9.98□□□□□ -0.81
LDLR-208ENST00000558518 TRGC2P03986 189 aa9.98□□□□□ -0.81
LDLR-208ENST00000558518 CD5P06127 495 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms