RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SERPINA7P05543 415 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 FCGR2AP12318 317 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 FAHP16930 419 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 AKR1C4P17516 323 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CRYGSP22914 178 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OTX2P32243 289 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 NUP62P37198 522 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 STARP49675 285 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM50BP56557 158 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SIGLEC14Q08ET2 396 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 STK11Q15831 433 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 NRN1LQ496H8 165 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 JMJD6Q6NYC1 403 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PLXDC2Q6UX71 529 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 LHFPL1Q86WI0 220 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SULF2Q8IWU5 870 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CCDC36Q8IYA8 594 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF100Q8IYN0 542 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 LRRC18Q8N456 261 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ZIC4Q8N9L1 334 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CSNK2A3Q8NEV1 391 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR1F12Q8NHA8 337 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 MARCH1Q8TCQ1 289 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CASTOR1Q8WTX7 329 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 EMG1Q92979 244 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CPNE4Q96A23 557 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 VRK1Q99986 396 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SOX7Q9BT81 388 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PECRQ9BY49 303 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 REG4Q9BYZ8 158 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 DNTTIP1Q9H147 329 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 METTL9Q9H1A3 318 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PPA2Q9H2U2 334 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CHMP1AQ9HD42 196 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PCDHB16Q9NRJ7 776 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 GLS2Q9UI32 602 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ATPIF1Q9UII2 106 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 C14orf166Q9Y224 244 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 MEMO1Q9Y316 297 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 LOXL2Q9Y4K0 774 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 A0A087X0M5 115 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 A0A1B0GX30 115 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ZSCAN5BA6NJL1 495 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 FIGNL2A6NMB9 653 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 G3V3Y1 287 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 CCSO14618 274 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 SYNGR3O43761 229 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 HPNP05981 417 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 CRHP06850 196 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 LIPCP11150 499 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 SERPINA2P20848 420 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 PSMB6P28072 239 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 BLVRBP30043 206 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ATP1B3P54709 279 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 SNU13P55769 128 aaKnown RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 UBE2V2Q15819 145 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 KRTAP27-1Q3LI81 207 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 CHRFAM7AQ494W8 412 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 KCTD9Q7L273 389 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 AAED1Q7RTV5 226 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 GALNTL5Q7Z4T8 443 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 GGNQ86UU5 652 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ADAD2Q8NCV1 583 aaKnown RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 PXT1Q8NFP0 134 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 OR5AP2Q8NGF4 316 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 CT55Q8WUE5 264 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 PCNPQ8WW12 178 aaKnown RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM45BQ96B21 275 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 FBXO17Q96EF6 278 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 WBP1Q96G27 269 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 LIN37Q96GY3 246 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 REEP6Q96HR9 211 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 CXorf58Q96LI9 332 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 NARFLQ9H6Q4 476 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ELL3Q9HB65 397 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 RASL12Q9NYN1 266 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 EHFQ9NZC4 300 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ABI3Q9P2A4 366 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF230Q9UIE0 474 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-206ENST00000558338 OSGIN2Q9Y236 505 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 TIMM10BQ9Y5J6 103 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 EML6Q6ZMW3 1958 aa6.35□□□□□ -1.39
VPS13C-206ENST00000558338 TRBV6-7A0A0A0MS04 114 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 RNF222A6NCQ9 220 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 PGPEP1LA6NFU8 196 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 LRRC3CA6NJW4 275 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF716A6NP11 495 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 A8MXK9 166 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 XRCC2O43543 280 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 CYTIPO60759 359 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 RAD51DO75771 328 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 HTR3BO95264 441 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 FARS2O95363 451 aaKnown RBP6.34□□□□□ -1.39
VPS13C-206ENST00000558338 PDGFBP01127 241 aaPredicted RBP6.34□□□□□ -1.39
VPS13C-206ENST00000558338 SERPINA5P05154 406 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 FGF2P09038 288 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 TCN2P20062 427 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 CNR1P21554 472 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 DTYMKP23919 212 aa6.34□□□□□ -1.39
VPS13C-206ENST00000558338 GDF1P27539 372 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms