RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NCOR1O75376 2440 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 DSPP15924 2871 aaKnown RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 PATE3B3GLJ2 98 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 DHHO43323 396 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 TLX3O43711 291 aaPredicted RBP11.26□□□□□ -0.61
LDLR-207ENST00000558013 FBXO24O75426 580 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SERPINA5P05154 406 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 PRF1P14222 555 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 C5orf24Q7Z6I8 188 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 CLRN3Q8NCR9 226 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 OR9K2Q8NGE7 335 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 MR1Q95460 341 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SHDQ96IW2 340 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 SLC6A15Q9H2J7 730 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 RAB18Q9NP72 206 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 PLEKHJ1Q9NW61 149 aa11.26□□□□□ -0.61
LDLR-207ENST00000558013 A0A1B0GW55 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 CCDC85CA6NKD9 419 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 LRP3O75074 770 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 IGLV3-1P01715 115 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L2P0CJ85 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L3P0CJ86 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L4P0CJ87 422 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L5P0CJ88 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L6P0CJ89 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4L7P0CJ90 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 CD79AP11912 226 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 EIF1P41567 113 aaKnown RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 RIPPLY1Q0D2K3 151 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 PNLIPRP3Q17RR3 467 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 ZNF774Q6NX45 483 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 PRSS54Q6PEW0 395 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 Q7L0L9 218 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 YRDCQ86U90 279 aaKnown RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 TMEM123Q8N131 208 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 POC1AQ8NBT0 407 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 STOML3Q8TAV4 291 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 S100A13Q99584 98 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 DUX4Q9UBX2 424 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 HS3ST3B1Q9Y662 390 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 CFAP47Q6ZTR5 3102 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 IGHV1-45A0A0A0MS14 117 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 FIGNL2A6NMB9 653 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 F8W036 122 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 KLF7O75840 302 aaPredicted RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 MTCP1P56278 107 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 BLOC1S1P78537 153 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 AKR7LQ8NHP1 331 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 SLC25A43Q8WUT9 341 aaPredicted RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 NECAB3Q96P71 396 aaPredicted RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 ALKBH3Q96Q83 286 aaPredicted RBP11.25□□□□□ -0.61
LDLR-207ENST00000558013 ULBP2Q9BZM5 246 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 CHST5Q9GZS9 411 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 TREM1Q9NP99 234 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 TMEM100Q9NV29 134 aa11.25□□□□□ -0.61
LDLR-207ENST00000558013 TP53I11O14683 189 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 NME2P22392 152 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 NFYBP25208 207 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 NPBWR1P48145 328 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 RBM39Q14498 530 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 LYSMD4Q5XG99 296 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 HAS2Q92819 552 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 TOMM40LQ969M1 308 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 BSCL2Q96G97 398 aaPredicted RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 SLC5A7Q9GZV3 580 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 C19orf25Q9UFG5 118 aaPredicted RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 V9GYS6 101 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 CFIP05156 583 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 COX6A1P12074 109 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 LIFP15018 202 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 LPAR6P43657 344 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 NOVA1P51513 510 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 RPS18P62269 152 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 LSM6P62312 80 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 CYCSP99999 105 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 IL15RAQ13261 267 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 IAH1Q2TAA2 248 aaPredicted RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 TMEM156Q8N614 296 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 FGFBP3Q8TAT2 258 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 RNF141Q8WVD5 230 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 MRPL24Q96A35 216 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 C2orf50Q96LR7 162 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 SAV1Q9H4B6 383 aaPredicted RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 CRLF2Q9HC73 371 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 PCDHB16Q9NRJ7 776 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 IGHV3-9P01782 118 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 CSTBP04080 98 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 B4GALT1P15291 398 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 ZNF708P17019 499 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 CTSSP25774 331 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 PIGYQ3MUY2 71 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 FREM1Q5H8C1 2179 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 PABPC1L2AQ5JQF8 200 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 H3F3CQ6NXT2 135 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 RPUSD3Q6P087 351 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 TMEM54Q969K7 222 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 MARS2Q96GW9 593 aaKnown RBP11.24□□□□□ -0.61
LDLR-207ENST00000558013 IMMP1LQ96LU5 166 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 AIFM2Q9BRQ8 373 aa11.24□□□□□ -0.61
LDLR-207ENST00000558013 DKKL1Q9UK85 242 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms