RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 AP2S1P53680 142 aaPredicted RBP15.11■□□□□ 0.01
SHOX-204ENST00000554971 SEC61A1P61619 476 aaKnown RBP15.11■□□□□ 0.01
SHOX-204ENST00000554971 LPCAT3Q6P1A2 487 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 ZNF584Q8IVC4 421 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 MCEMP1Q8IX19 187 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 MUC20Q8N307 709 aaPredicted RBP15.11■□□□□ 0.01
SHOX-204ENST00000554971 TNFAIP8L1Q8WVP5 186 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 EMC6Q9BV81 110 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 C12orf49Q9H741 205 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 COQ3Q9NZJ6 369 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 JKAMPQ9P055 326 aa15.11■□□□□ 0.01
SHOX-204ENST00000554971 TMEM82A0PJX8 343 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 SSTR2P30874 369 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 OPRM1P35372 400 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 LSM6P62312 80 aaKnown RBP15.1■□□□□ 0.01
SHOX-204ENST00000554971 GRB2P62993 217 aaKnown RBP15.1■□□□□ 0.01
SHOX-204ENST00000554971 QRFPP83859 136 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 ZNF260Q3ZCT1 412 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 CORO6Q6QEF8 472 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 IDO2Q6ZQW0 420 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 ZNF808Q8N4W9 903 aaPredicted RBP15.1■□□□□ 0.01
SHOX-204ENST00000554971 OR4D6Q8NGJ1 314 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 OR10S1Q8NGN2 331 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 OR6K3Q8NGY3 331 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 CNTD2Q9H8S5 307 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 LHFPL6Q9Y693 200 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 CSMD2Q7Z408 3487 aa15.1■□□□□ 0.01
SHOX-204ENST00000554971 A0A1W2PPL8 197 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 RAB27BO00194 218 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 AGAP20933 346 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 CCL1P22362 96 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 GNALP38405 381 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 TFF3Q07654 80 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 TAF13Q15543 124 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 C4orf46Q504U0 113 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 CCDC54Q8NEL0 328 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 SSC4DQ8WTU2 575 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 OPN3Q9H1Y3 402 aaPredicted RBP15.09■□□□□ 0.01
SHOX-204ENST00000554971 PLSCR4Q9NRQ2 329 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 POLR1DQ9Y2S0 133 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 UNC79Q9P2D8 2635 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 ABCA12Q86UK0 2595 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 A0A1B0GTI1 187 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 RPS10-NUDT3A0A1W2PQS6 291 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 NKX2-6A6NCS4 301 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 SHOXO15266 292 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 AMY2AP04746 511 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 ZNF735P0CB33 412 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 ZNF20P17024 532 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 S100A11P31949 105 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 SRSF4Q08170 494 aaKnown RBP15.09■□□□□ 0.01
SHOX-204ENST00000554971 FGL1Q08830 312 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 FAHD2BQ6P2I3 314 aaPredicted RBP15.09■□□□□ 0.01
SHOX-204ENST00000554971 TFAP2EQ6VUC0 442 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 CCDC28AQ8IWP9 274 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 C12orf45Q8N5I9 185 aaPredicted RBP15.09■□□□□ 0.01
SHOX-204ENST00000554971 ZDHHC22Q8N966 263 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 OR1J2Q8NGS2 313 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 OR8S1Q8NH09 359 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 CA5BP1Q8WTZ4 195 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 ELMOD3Q96FG2 381 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 FAHD2AQ96GK7 314 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 KCNK15Q9H427 330 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 NOSIPQ9Y314 301 aaKnown RBP15.09■□□□□ 0.01
SHOX-204ENST00000554971 CSMD1Q96PZ7 3565 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 ITPR2Q14571 2701 aa15.09■□□□□ 0.01
SHOX-204ENST00000554971 FAM90A27PA6NNH2 459 aa15.08■□□□□ 0
SHOX-204ENST00000554971 OR4E1P0C645 316 aa15.08■□□□□ 0
SHOX-204ENST00000554971 UBBP0CG47 229 aa15.08■□□□□ 0
SHOX-204ENST00000554971 CXCL2P19875 107 aa15.08■□□□□ 0
SHOX-204ENST00000554971 CALCRP30988 508 aa15.08■□□□□ 0
SHOX-204ENST00000554971 ZNF133P52736 654 aaPredicted RBP15.08■□□□□ 0
SHOX-204ENST00000554971 C1QTNF12Q5T7M4 302 aa15.08■□□□□ 0
SHOX-204ENST00000554971 ZNF474Q6S9Z5 364 aaPredicted RBP15.08■□□□□ 0
SHOX-204ENST00000554971 BPIFB2Q8N4F0 458 aa15.08■□□□□ 0
SHOX-204ENST00000554971 OR52B4Q8NGK2 314 aa15.08■□□□□ 0
SHOX-204ENST00000554971 TMEM45BQ96B21 275 aa15.08■□□□□ 0
SHOX-204ENST00000554971 POFUT1Q9H488 388 aa15.08■□□□□ 0
SHOX-204ENST00000554971 SEC61A2Q9H9S3 476 aa15.08■□□□□ 0
SHOX-204ENST00000554971 MED9Q9NWA0 146 aa15.08■□□□□ 0
SHOX-204ENST00000554971 GLTPQ9NZD2 209 aa15.08■□□□□ 0
SHOX-204ENST00000554971 PLEKHA6Q9Y2H5 1048 aa15.08■□□□□ 0
SHOX-204ENST00000554971 SETXQ7Z333 2677 aaKnown RBP15.08■□□□□ 0
SHOX-204ENST00000554971 ROS1P08922 2347 aa15.08■□□□□ 0
SHOX-204ENST00000554971 TMEM14DPA8MWL7 114 aa15.07■□□□□ 0
SHOX-204ENST00000554971 A8MXE2 369 aa15.07■□□□□ 0
SHOX-204ENST00000554971 GUCA1AP43080 201 aaPredicted RBP15.07■□□□□ 0
SHOX-204ENST00000554971 CLDN17P56750 224 aa15.07■□□□□ 0
SHOX-204ENST00000554971 H2BFSP57053 126 aa15.07■□□□□ 0
SHOX-204ENST00000554971 NHLRC3Q5JS37 347 aa15.07■□□□□ 0
SHOX-204ENST00000554971 DOK3Q7L591 496 aa15.07■□□□□ 0
SHOX-204ENST00000554971 PAQR4Q8N4S7 273 aaPredicted RBP15.07■□□□□ 0
SHOX-204ENST00000554971 ZNF610Q8N9Z0 462 aa15.07■□□□□ 0
SHOX-204ENST00000554971 DVL3Q92997 716 aaPredicted RBP15.07■□□□□ 0
SHOX-204ENST00000554971 ADAT3Q96EY9 351 aaPredicted RBP15.07■□□□□ 0
SHOX-204ENST00000554971 FBN2P35556 2912 aa15.07■□□□□ 0
SHOX-204ENST00000554971 CADP27708 2225 aa15.07■□□□□ 0
SHOX-204ENST00000554971 MEIS3P1A6NDR6 274 aa15.07■□□□□ 0
SHOX-204ENST00000554971 EEF1E1-BLOC1S5C9J1V9 151 aa15.07■□□□□ 0
SHOX-204ENST00000554971 CLDN14O95500 239 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms