RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZNF879B4DU55 563 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 DLGAP1O14490 977 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 TMPRSS2O15393 492 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 NRASP01111 189 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 TFF1P04155 84 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 LIPFP07098 398 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 GMFBP60983 142 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 FGF12P61328 243 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 CLVS2Q5SYC1 327 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 MEDAGQ5VYS4 303 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 PLCXD3Q63HM9 321 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF788Q6ZQV5 615 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 ZBTB49Q6ZSB9 765 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 BTN2A1Q7KYR7 527 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 ENTHD1Q8IYW4 607 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 PRSS35Q8N3Z0 413 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 FAM216BQ8N7L0 139 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 SIGLECL1Q8N7X8 197 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 LY6G5BQ8NDX9 201 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 RHOXF1Q8NHV9 184 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 ANGPTL6Q8NI99 470 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 FAM216AQ8WUB2 273 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 AQP3Q92482 292 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 RNFT2Q96EX2 444 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 TBX15Q96SF7 602 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 SIRPDQ9H106 197 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 GPR173Q9NS66 373 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 SNTG1Q9NSN8 517 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 EXOGQ9Y2C4 368 aaKnown RBP8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 GMPPBQ9Y5P6 360 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 MEGF8Q7Z7M0 2845 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 WNK2Q9Y3S1 2297 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 TRAV40A0A0B4J280 105 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 PQLC2LA1A4F0 135 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 A6NIN4 97 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 TRIM77I1YAP6 450 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 ECDO95905 644 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 SELLP14151 372 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 KIR3DL2P43630 455 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 CDONQ4KMG0 1287 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 TP53I3Q53FA7 332 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 HAGHLQ6PII5 290 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 SLC36A1Q7Z2H8 476 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 PNLDC1Q8NA58 520 aaKnown RBP8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF671Q8TAW3 534 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 ST8SIA4Q92187 359 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 LGALS12Q96DT0 336 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 C1orf147Q96MC9 270 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 GAFA1Q96PS6 74 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 JMJD8Q96S16 334 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 DNTTIP1Q9H147 329 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 ACOXLQ9NUZ1 547 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 FAM118AQ9NWS6 357 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 NLKQ9UBE8 527 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 RPUSD1Q9UJJ7 312 aaKnown RBP8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF222Q9UK12 451 aa8.49□□□□□ -1.05
CCDC88C-206ENST00000553437 IGKV1D-17A0A075B6S4 117 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 LOC100130705A0A1B0GUX0 176 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 A0A1B0GVI7 797 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 OR2AT4A6NND4 320 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 GPR37O15354 613 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 SIGLEC5O15389 551 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 SLC16A6O15403 523 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 SYT7O43581 403 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 NDUFB3O43676 98 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 SYNGR1O43759 233 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 NOS1APO75052 506 aaPredicted RBP8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 BAG2O95816 211 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 SFTPBP07988 381 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ACAA1P09110 424 aaPredicted RBP8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 PSG2P11465 335 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 GLRA1P23415 457 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 OR12D2P58182 307 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ARF6P62330 175 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 UBA52P62987 128 aaKnown RBP8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ACTC1P68032 377 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ACTA1P68133 377 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF91Q05481 1191 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 IKZF1Q13422 519 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 UBE2V2Q15819 145 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 DGUOKQ16854 277 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ODF4Q2M2E3 257 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 FDX2Q6P4F2 183 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 KCTD20Q7Z5Y7 419 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF573Q86YE8 665 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 RDH10Q8IZV5 341 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 POC1AQ8NBT0 407 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 CCDC54Q8NEL0 328 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 OR2G2Q8NGZ5 317 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 APH1BQ8WW43 257 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 WDFY2Q96P53 400 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF649Q9BS31 505 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 PCGF1Q9BSM1 259 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 DCTN5Q9BTE1 182 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 MS4A7Q9GZW8 240 aaPredicted RBP8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 PRDM13Q9H4Q3 707 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 DCLRE1BQ9H816 532 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 CNTD2Q9H8S5 307 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 DNAJB11Q9UBS4 358 aa8.48□□□□□ -1.05
CCDC88C-206ENST00000553437 GNG8Q9UK08 70 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms