RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 FAM57BQ71RH2 274 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 GALNTL5Q7Z4T8 443 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 LURAP1LQ8IV03 231 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 OR14K1Q8NGZ2 314 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 POC1BQ8TC44 478 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 ST8SIA1Q92185 356 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MRPL24Q96A35 216 aaKnown RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MVB12AQ96EY5 273 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 LYZL4Q96KX0 146 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 GPER1Q99527 375 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 URM1Q9BTM9 101 aaKnown RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 C20orf24Q9BUV8 137 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 OR10A2Q9H208 303 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 WFDC1Q9HC57 220 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PISDQ9UG56 409 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MCTS1Q9ULC4 181 aaKnown RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 B3GALT5Q9Y2C3 310 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 SDK2Q58EX2 2172 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 DMDP11532 3685 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 hCG_1809904A0A1W2PP81 198 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PPH5 198 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PR64 198 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PRV1 198 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 C1orf196B1AJZ1 125 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF878C9JN71 531 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SGCEO43556 437 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 JTBO76095 146 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 GAPDHP04406 335 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SMIM6P0DI80 62 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 FBLP22087 321 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ACKR3P25106 362 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 BLVRBP30043 206 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 OR1D5P58170 312 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 TAS2R46P59540 309 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SMCO1Q147U7 214 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SURF2Q15527 256 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 KISS1Q15726 138 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 UBE2V2Q15819 145 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 EIF2S3LQ2VIR3 472 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 AWAT1Q58HT5 328 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 LCN10Q6JVE6 187 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 C6orf201Q7Z4U5 140 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 C17orf82Q86X59 251 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF561Q8N587 486 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 APCDD1LQ8NCL9 501 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 OR51T1Q8NGJ9 327 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 EMG1Q92979 244 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SHDQ96IW2 340 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 RSRP1Q9BUV0 290 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 PECRQ9BY49 303 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 MTIF3Q9H2K0 278 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 RPS10P5Q9NQ39 176 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 GSN-AS1Q9NRJ2 163 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 C1orf123Q9NWV4 160 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 POLR1DQ9Y2S0 133 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 STARD10Q9Y365 291 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 KPTNQ9Y664 436 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 C7orf77A4D0Y5 90 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 STMND1H3BQB6 276 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 K7EPK0 472 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 UBE2CO00762 179 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 TRAF3IP2O43734 574 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 NME2P1O60361 137 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 DEDDO75618 318 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 MT-ND4LP03901 98 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 S100A9P06702 114 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 S100A6P06703 90 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 FABP1P07148 127 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SNRNP70P08621 437 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 GIMD1P0DJR0 217 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 NME1P15531 152 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SERPINA2P20848 420 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 AGAP20933 346 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 CCL1P22362 96 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF84P51523 738 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 GABREP78334 506 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 FAM3AP98173 230 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SMAD4Q13485 552 aaKnown RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SP6Q3SY56 376 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 MIDNQ504T8 468 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 THEM4Q5T1C6 240 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 GGNBP1Q5YKI7 109 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SLC25A47Q6Q0C1 308 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 LINC00528Q8N1L1 170 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 FAM71E2Q8N5Q1 922 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 KDF1Q8NAX2 398 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 NOXO1Q8NFA2 376 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SEMA6DQ8NFY4 1073 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 EDARADDQ8WWZ3 215 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 DDIT4LQ96D03 193 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 POM121Q96HA1 1249 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 PRRX2Q99811 253 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 TPSD1Q9BZJ3 242 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 TUBA4BQ9H853 241 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 SEBOXQ9HB31 216 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ALKBH4Q9NXW9 302 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 ZDHHC8Q9ULC8 765 aa4.75□□□□□ -1.65
LIMA1-212ENST00000552491 RPH3AQ9Y2J0 694 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-212ENST00000552491 LSM5Q9Y4Y9 91 aaKnown RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms