RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 VSIG8P0DPA2 414 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 RAB35Q15286 201 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 TRIP6Q15654 476 aaKnown RBP13.25□□□□□ -0.29
CUX1-214ENST00000550008 MRGPREQ86SM8 312 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 KCNRGQ8N5I3 272 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 KLHDC3Q9BQ90 382 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 AQP7P3A6NL99 342 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 CLDN1O95832 211 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 LIFP15018 202 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 NFYBP25208 207 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ASCL1P50553 236 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 IGLV3-21P80748 117 aaPredicted RBP13.25□□□□□ -0.29
CUX1-214ENST00000550008 ZNF766Q5HY98 468 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ZNF468Q5VIY5 522 aaPredicted RBP13.25□□□□□ -0.29
CUX1-214ENST00000550008 ZNF529Q6P280 563 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 OR10J5Q8NHC4 309 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 VOPP1Q96AW1 172 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 SLC25A38Q96DW6 304 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 DHRS9Q9BPW9 319 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ANAPC1Q9H1A4 1944 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 MS4A18H0YCH9 400 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 CA6P23280 308 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 GGTLC2Q14390 218 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 MS4A18Q3C1V0 323 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 LPCAT3Q6P1A2 487 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ARHGEF39Q8N4T4 335 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ABHD5Q8WTS1 349 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 PUS1Q9Y606 427 aaKnown RBP eCLIP13.25□□□□□ -0.29
CUX1-214ENST00000550008 NPIPB9F8W1W9 429 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 ZNF674Q2M3X9 581 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 SMUG1Q53HV7 270 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 APCDD1LQ8NCL9 501 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 RNF141Q8WVD5 230 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 CMTM3Q96MX0 182 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 DYNLRB1Q9NP97 96 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 AQP8O94778 261 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 IL5P05113 134 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 MMP16P51512 607 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 P2RX3P56373 397 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 ERVK-16P61578 105 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 MRPS34P82930 218 aaKnown RBP13.24□□□□□ -0.29
CUX1-214ENST00000550008 TMEM128Q5BJH2 165 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 ZNF362Q5T0B9 420 aaPredicted RBP13.24□□□□□ -0.29
CUX1-214ENST00000550008 PILRBQ9UKJ0 227 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 IGLV1-36A0A0B4J1U3 117 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 ST8SIA3O43173 380 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 MOGAT2Q3SYC2 334 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 TSPO2Q5TGU0 170 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 ZNF574Q6ZN55 896 aaPredicted RBP13.24□□□□□ -0.29
CUX1-214ENST00000550008 OR1J1Q8NGS3 322 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 DYRK2Q92630 601 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 EXTL1Q92935 676 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 RAB33BQ9H082 229 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 SCN8AQ9UQD0 1980 aa13.24□□□□□ -0.29
CUX1-214ENST00000550008 KLK10O43240 276 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 ACTL6BO94805 426 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 OR8G2PQ6IF36 304 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 NR2C2APQ86WQ0 139 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 DMBX1Q8NFW5 382 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 MAP6Q96JE9 813 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 PFDN5Q99471 154 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 TAF9BQ9HBM6 251 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 MED13LQ71F56 2210 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 TRIM64BA6NI03 449 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 NKX2-1P43699 371 aaPredicted RBP13.23□□□□□ -0.29
CUX1-214ENST00000550008 CLPPQ16740 277 aaPredicted RBP13.23□□□□□ -0.29
CUX1-214ENST00000550008 TMEM104Q8NE00 496 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 ST8SIA2Q92186 375 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 FBXW5Q969U6 566 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 IP6K3Q96PC2 410 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 GPX7Q96SL4 187 aaPredicted RBP13.23□□□□□ -0.29
CUX1-214ENST00000550008 KIR2DS1A0A191URI9 304 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 NME2P1O60361 137 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 ARR3P36575 388 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 KIR2DS4P43632 304 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 C19orf57Q0VDD7 668 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 KIR2DS1Q14954 304 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 C20orf24Q9BUV8 137 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 PRMT8Q9NR22 394 aaPredicted RBP13.23□□□□□ -0.29
CUX1-214ENST00000550008 CA10Q9NS85 328 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 SERPINE3A8MV23 424 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 ZNF626Q68DY1 528 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 RTL8AQ9BWD3 113 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 SLC25A31Q9H0C2 315 aa13.23□□□□□ -0.29
CUX1-214ENST00000550008 FAM212BQ9NTI7 297 aaPredicted RBP13.23□□□□□ -0.29
CUX1-214ENST00000550008 ZNF407Q9C0G0 2248 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 PHF3Q92576 2039 aaKnown RBP13.22□□□□□ -0.29
CUX1-214ENST00000550008 MED19A0JLT2 244 aaPredicted RBP13.22□□□□□ -0.29
CUX1-214ENST00000550008 FUT6P51993 359 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 CFHR1Q03591 330 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 OR8B8Q15620 311 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 ATPAF1Q5TC12 328 aaPredicted RBP13.22□□□□□ -0.29
CUX1-214ENST00000550008 SSX9Q7RTT3 188 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 M1APQ8TC57 530 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 HES7Q9BYE0 225 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 GFOD1Q9NXC2 390 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 A0A0U1RQK1 487 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 TO15178 435 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 OR2F2O95006 317 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 OR2F1Q13607 317 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms