RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	NTN3	O00634	580 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	CDK2AP1	O14519	115 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	RAMP1	O60894	148 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	FAH	P16930	419 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	CRYGS	P22914	178 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	IL32	P24001	234 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	TSPAN7	P41732	249 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	FUT6	P51993	359 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	CARD18	P57730	90 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	SUPT4H1	P63272	117 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	FLI1	Q01543	452 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	ZFP36L1	Q07352	338 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	PJVK	Q0ZLH3	352 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	OR8B8	Q15620	311 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	LCN10	Q6JVE6	187 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	DHRS11	Q6UWP2	260 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	SGK3	Q96BR1	496 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	BORCS8	Q96FH0	119 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	ZNF385A	Q96PM9	386 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	MESP1	Q9BRJ9	268 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	SUCNR1	Q9BXA5	334 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	SEC11C	Q9BY50	192 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	CNTNAP3	Q9BZ76	1288 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	BCO1	Q9HAY6	547 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	ZNF701	Q9NV72	531 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	LPAR3	Q9UBY5	353 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	NDRG3	Q9UGV2	375 aa		11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	CARHSP1	Q9Y2V2	147 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-223	ENST00000544669	SEC16A	O15027	2179 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	XRCC2	O43543	280 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	KLF7	O75840	302 aa	Predicted RBP	11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	FARS2	O95363	451 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	UMOD	P07911	640 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	CCL3	P10147	92 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	UCP3	P55916	312 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	RP1	P56715	2156 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	HMGN3	Q15651	99 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	PABPC1L2A	Q5JQF8	200 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	C10orf91	Q5T1B1	145 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	TMEM200A	Q86VY9	491 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	COMMD1	Q8N668	190 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	OR1S2	Q8NGQ3	325 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	GNRHR2	Q96P88	292 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	ZPBP	Q9BS86	351 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	CYTL1	Q9NRR1	136 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	COQ3	Q9NZJ6	369 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	TUBD1	Q9UJT1	453 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	PURG	Q9UJV8	347 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	PADI1	Q9ULC6	663 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	HS3ST3B1	Q9Y662	390 aa		11.4	□□□□□ -0.58
CPSF7-223	ENST00000544669	OR5H15	A6NDH6	313 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CRYM-AS1	A6NIL9	109 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	TRIM77	I1YAP6	450 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669		K7EPK0	472 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SMAD9	O15198	467 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SYNGR3	O43761	229 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	RPS2	P15880	293 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	GLRA1	P23415	457 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SRPX	P78539	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CHAF1B	Q13112	559 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	ANKRD55	Q3KP44	614 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	RPUSD3	Q6P087	351 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM185A	Q8N0U4	392 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	LRRC18	Q8N456	261 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM71E2	Q8N5Q1	922 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZIC4	Q8N9L1	334 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CCDC71L	Q8N9Z2	235 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	ADAMTS17	Q8TE56	1095 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	GALNT14	Q96FL9	552 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	REEP6	Q96HR9	211 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SMIM8	Q96KF7	97 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	JSRP1	Q96MG2	331 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CMSS1	Q9BQ75	279 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SOX7	Q9BT81	388 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	SLC5A7	Q9GZV3	580 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	TMEM38B	Q9NVV0	291 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CACNA1C	Q13936	2221 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	CEP192	Q8TEP8	1941 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669		A0A0J9YW62	118 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669		A0A1W2PP11	408 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A10P	A6NDY2	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A18P	A6NE21	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A16P	A6NEW6	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A20P	A6NIJ5	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A8P	A6NJQ4	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A7P	A6NKC0	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A22P	A8MWA6	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A12P	A8MX19	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A5P	A8MXJ8	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A23P	A8MXZ1	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669		H7C2Y5	167 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	HTR3B	O95264	441 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A15P	P0C7V4	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A13P	P0C7W8	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A14P	P0C7W9	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM90A24P	P0C7X0	464 aa		11.39	□□□□□ -0.59
CPSF7-223	ENST00000544669	OR5H8	P0DN80	308 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms