RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MMP26Q9NRE1 261 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 CNOT2Q9NZN8 540 aaKnown RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 LRCH1Q9Y2L9 728 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 EXOSC1Q9Y3B2 195 aaKnown RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 MXRA5Q9NR99 2828 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 IGHV3OR15-7A0A075B7D8 119 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 EFCAB10A6NFE3 127 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 PHF1O43189 567 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-209ENST00000532725 ZFPL1O95159 310 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 GYPAP02724 150 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 MUC1P15941 1255 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-209ENST00000532725 MICBQ29980 383 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 TMPRSS11AQ6ZMR5 421 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 IL17RELQ6ZVW7 336 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 BPIFB6Q8NFQ5 453 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 OR8B3Q8NGG8 313 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF671Q8TAW3 534 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 ADAT3Q96EY9 351 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-209ENST00000532725 OR8B2Q96RD0 313 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 SSBP3Q9BWW4 388 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-209ENST00000532725 WDR13Q9H1Z4 485 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 PLEKHA1Q9HB21 404 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 FKBP14Q9NWM8 211 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 BABAM2Q9NXR7 383 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 ERVK-18Q9QC07 812 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 HHLA2Q9UM44 414 aa16.56■□□□□ 0.24
CPSF1-209ENST00000532725 DOCK11Q5JSL3 2073 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 AKR7A2O43488 359 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 SERPINA3P01011 423 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 AVPP01185 164 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 FAM157CP0CG43 387 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 MYL12AP19105 171 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 GATA3P23771 443 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 PAX2Q02962 417 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 CCDC58Q4VC31 144 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 C6orf141Q5SZD1 244 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 XAF1Q6GPH4 301 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 HAGHLQ6PII5 290 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-209ENST00000532725 C1orf229Q6ZS94 237 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-209ENST00000532725 NLRC3Q7RTR2 1065 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 PRIMA1Q86XR5 153 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF573Q86YE8 665 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF676Q8N7Q3 588 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF485Q8NCK3 441 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 OR51A4Q8NGJ6 313 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 FGGYQ96C11 551 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 C12orf43Q96C57 262 aaKnown RBP16.55■□□□□ 0.24
CPSF1-209ENST00000532725 TMPRSS13Q9BYE2 586 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 CHST5Q9GZS9 411 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 KAAG1Q9UBP8 84 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 CTSZQ9UBR2 303 aa16.55■□□□□ 0.24
CPSF1-209ENST00000532725 A0A0G2JMP0 313 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 A0A0X1KG70 313 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 TMEM212A6NML5 194 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 J3QLI3 93 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 RPSAP08865 295 aaKnown RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 CCDC159P0C7I6 412 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 AMY2BP19961 511 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 C21orf33P30042 268 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 HAAOP46952 286 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 PITPNBP48739 271 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 ATPAF1Q5TC12 328 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 DCAF12L2Q5VW00 463 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 WDR25Q64LD2 544 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 RPL22L1Q6P5R6 122 aaKnown RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 OR4M2Q8NGB6 313 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 OR5AK2Q8NH90 309 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 RPS4Y2Q8TD47 263 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 GATAD2BQ8WXI9 593 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 PP6455Q8WZ26 134 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 PDCD1LG2Q9BQ51 273 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 CHCHD3Q9NX63 227 aaKnown RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 SLC7A11Q9UPY5 501 aa16.54■□□□□ 0.24
CPSF1-209ENST00000532725 SIRT4Q9Y6E7 314 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-209ENST00000532725 IGKV1-9A0A0C4DH69 117 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 TRBV2A0A0J9YWF9 115 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 OGG1O15527 345 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 ADAM20O43506 726 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 FCN3O75636 299 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 GATBO75879 557 aaKnown RBP16.53■□□□□ 0.24
CPSF1-209ENST00000532725 HNF1AP20823 631 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 MYF6P23409 242 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 FUT6P51993 359 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 GMFBP60983 142 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 GNB2P62879 340 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 MED21Q13503 144 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 IZUMO2Q6UXV1 221 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 UTS2BQ765I0 119 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 ANGPTL5Q86XS5 388 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 OR5T2Q8NGG2 359 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 OR52N1Q8NH53 320 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 DACT3Q96B18 629 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-209ENST00000532725 TECTBQ96PL2 329 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 ANKRD60Q9BZ19 345 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 RASSF4Q9H2L5 321 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 CLN8Q9UBY8 286 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 INSIG2Q9Y5U4 225 aa16.53■□□□□ 0.24
CPSF1-209ENST00000532725 IGKV1-27A0A075B6S5 117 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 FAM230AA0A1W2PPH8 454 aa16.52■□□□□ 0.24
CPSF1-209ENST00000532725 J3QT63 122 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms