RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 A0A1W2PQ09 198 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ANKRD61A6NGH8 418 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 CIB2O75838 187 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ATP5HO75947 161 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 PSG2P11465 335 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ALOX5APP20292 161 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 GLRA1P23415 457 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 GNG3P63215 75 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 CDK5Q00535 292 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 BLMHQ13867 455 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 CEACAM21Q3KPI0 293 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 SLC35D3Q5M8T2 416 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 C1orf146Q5VVC0 180 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 SLC35E4Q6ICL7 350 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 TMEM179BQ7Z7N9 219 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ZNRF1Q8ND25 227 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 OR5D13Q8NGL4 314 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 FAM110DQ8TAY7 271 aaPredicted RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 C17orf50Q8WW18 174 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 DNAJC9Q8WXX5 260 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 SDSLQ96GA7 329 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 AJUBAQ96IF1 538 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 HIST1H2AAQ96QV6 131 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 CADM1Q9BY67 442 aaKnown RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 PRRG3Q9BZD7 231 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 PPA2Q9H2U2 334 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ELL3Q9HB65 397 aaPredicted RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 PAPOLBQ9NRJ5 636 aaKnown RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 FAM206AQ9NX38 181 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 SF3B6Q9Y3B4 125 aaKnown RBP9.26□□□□□ -0.93
VPS28-214ENST00000531032 MAB21L2Q9Y586 359 aa9.26□□□□□ -0.93
VPS28-214ENST00000531032 ACOD1A6NK06 481 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 ZNF732B4DXR9 585 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 H3BUX3 64 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 GSC2O15499 205 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 CSF1P09603 554 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 ATP6V1B1P15313 513 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 PRKACGP22612 351 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 SLC2A5P22732 501 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 GABRA5P31644 462 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 MAP2K3P46734 347 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 GABRA2P47869 451 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 EFNB2P52799 333 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 BNIP1Q12981 228 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 AANATQ16613 207 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 CEP78Q5JTW2 689 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 DEGS2Q6QHC5 323 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 C1QL4Q86Z23 238 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 CPOQ8IVL8 374 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 TMEM185AQ8NFB2 350 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 BBS1Q8NFJ9 593 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 PPP1R35Q8TAP8 253 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 FAM81AQ8TBF8 368 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 AQP3Q92482 292 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 LAMP5Q9UJQ1 280 aa9.25□□□□□ -0.93
VPS28-214ENST00000531032 OR5B21A6NL26 309 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 H0YAE9 185 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 ANGPTL7O43827 346 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 MTRF1O75570 445 aaKnown RBP9.24□□□□□ -0.93
VPS28-214ENST00000531032 IGLV3-1P01715 115 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 HERPUD1Q15011 391 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 SNAPC1Q16533 368 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 ZBTB37Q5TC79 503 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 LCN1P1Q5VSP4 162 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 C11orf88Q6PI97 169 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 CRIP3Q6Q6R5 217 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 ACP7Q6ZNF0 438 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 THAP5Q7Z6K1 395 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 KRT77Q7Z794 578 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 FAM185AQ8N0U4 392 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 OR5A2Q8NGI9 324 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 OR51G2Q8NGK0 314 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 OR5K1Q8NHB7 308 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 ZNF671Q8TAW3 534 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 NRBF2Q96F24 287 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 SSX3Q99909 188 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 YIPF3Q9GZM5 350 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 FAM234AQ9H0X4 552 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 MEGF9Q9H1U4 602 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 RANBP3Q9H6Z4 567 aaPredicted RBP9.24□□□□□ -0.93
VPS28-214ENST00000531032 C19orf12Q9NSK7 152 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 RASL12Q9NYN1 266 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 TVP23BQ9NYZ1 205 aa9.24□□□□□ -0.93
VPS28-214ENST00000531032 TMEM269A0A1B0GVZ9 245 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 PRR32B1ATL7 298 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 FCGR1AP12314 374 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 FASP25445 335 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 KIR2DS4P43632 304 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 HCCSP53701 268 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 ROM1Q03395 351 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 RIPPLY1Q0D2K3 151 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 LRRC75BQ2VPJ9 315 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 SMIM21Q3B7S5 101 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 DMRTC1Q5HYR2 192 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 TMEM236Q5W0B7 351 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 KCTD18Q6PI47 426 aaPredicted RBP9.23□□□□□ -0.93
VPS28-214ENST00000531032 HAGHLQ6PII5 290 aaPredicted RBP9.23□□□□□ -0.93
VPS28-214ENST00000531032 Q6ZTK2 550 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 MKXQ8IYA7 352 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 ZNF561Q8N587 486 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms