RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZFP57Q9NU63 452 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 GSKIPQ9P0R6 139 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 DNAJB11Q9UBS4 358 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 C19orf25Q9UFG5 118 aaPredicted RBP16.87■□□□□ 0.29
VPS28-213ENST00000530983 LY6G6EA0A0G2JKS1 128 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 KNG1P01042 644 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 PET100P0DJ07 73 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 FKBP2P26885 142 aaKnown RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 SURF2Q15527 256 aaPredicted RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 RSPO4Q2I0M5 234 aaPredicted RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 LRRC18Q8N456 261 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 PP6455Q8WZ26 134 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 CNTNAP3BQ96NU0 1288 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 NECAB3Q96P71 396 aaPredicted RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 ZNF385AQ96PM9 386 aaKnown RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 MCTS1Q9ULC4 181 aaKnown RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 U3KQA8 63 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 EIF3GO75821 320 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS28-213ENST00000530983 ZNF84P51523 738 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 S100A10P60903 97 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 AVPI1Q5T686 147 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 IL34Q6ZMJ4 242 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 C6orf201Q7Z4U5 140 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 SPEM1Q8N4L4 309 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 HAS2Q92819 552 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 TMEM54Q969K7 222 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 PIGTQ969N2 578 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 SHDQ96IW2 340 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 ZNF701Q9NV72 531 aaPredicted RBP16.86■□□□□ 0.29
VPS28-213ENST00000530983 PIGLQ9Y2B2 252 aa16.86■□□□□ 0.29
VPS28-213ENST00000530983 IGHV3-15A0A0B4J1V0 119 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 CELA2AP08217 269 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 CD63P08962 238 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 NR2C1P13056 603 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 PNLIPP16233 465 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 CPT2P23786 658 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 OTX1P32242 354 aaPredicted RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 GUCA1AP43080 201 aaPredicted RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 STARD6P59095 220 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 PJVKQ0ZLH3 352 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 MRPL14Q6P1L8 145 aaKnown RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 Q6ZSR3 168 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 FOXL2NBQ6ZUU3 175 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 SMIM8Q96KF7 97 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 CCDC74BQ96LY2 380 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 UQCC1Q9NVA1 299 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 ARID1AO14497 2285 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 SNAPINO95295 136 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 IFNA4P05014 189 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 ACAA1P09110 424 aaPredicted RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 DBHP09172 617 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 NFYBP25208 207 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 ZNF133P52736 654 aaPredicted RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 HIST1H3AP68431 136 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 SWI5Q1ZZU3 235 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 HIST2H3PS2Q5TEC6 136 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 HIST2H3AQ71DI3 136 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 PPP1R3BQ86XI6 285 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 ELL3Q9HB65 397 aaPredicted RBP16.85■□□□□ 0.29
VPS28-213ENST00000530983 TREM1Q9NP99 234 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 ACKR4Q9NPB9 350 aa16.85■□□□□ 0.29
VPS28-213ENST00000530983 DHRS7CA6NNS2 312 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 LINC00587B1AMM8 73 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 TP53I11O14683 189 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 SFTPBP07988 381 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 PDZK1IP1Q13113 114 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 RBM39Q14498 530 aaKnown RBP16.84■□□□□ 0.29
VPS28-213ENST00000530983 RPL7L1Q6DKI1 246 aaKnown RBP16.84■□□□□ 0.29
VPS28-213ENST00000530983 GALNTL5Q7Z4T8 443 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 LINC00469Q8N7U9 141 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 SEMA6DQ8NFY4 1073 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 UCN2Q96RP3 112 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 S100A13Q99584 98 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 HRH4Q9H3N8 390 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 C14orf166Q9Y224 244 aaKnown RBP16.84■□□□□ 0.29
VPS28-213ENST00000530983 PI4KAP42356 2102 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 MSTNO14793 375 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 CA11O75493 328 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 IFNA2P01563 188 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 HKR1P10072 659 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 SPEM2Q0P670 501 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 PCOLCEQ15113 449 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 FOXRED2Q8IWF2 684 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 TMEM123Q8N131 208 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 SAT2Q96F10 170 aaPredicted RBP16.84■□□□□ 0.29
VPS28-213ENST00000530983 HDHD3Q9BSH5 251 aaPredicted RBP16.84■□□□□ 0.29
VPS28-213ENST00000530983 SEC11CQ9BY50 192 aa16.84■□□□□ 0.29
VPS28-213ENST00000530983 KIAA1549Q9HCM3 1950 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 M0R135 149 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 ZNF708P17019 499 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 RCC1P18754 421 aaPredicted RBP16.83■□□□□ 0.28
VPS28-213ENST00000530983 GABRR1P24046 479 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 ZNF799Q96GE5 643 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 PIGQQ9BRB3 760 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 ZNF2Q9BSG1 426 aaPredicted RBP16.83■□□□□ 0.28
VPS28-213ENST00000530983 RBM24Q9BX46 236 aaKnown RBP16.83■□□□□ 0.28
VPS28-213ENST00000530983 EDARQ9UNE0 448 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 MEMO1Q9Y316 297 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 FAM96BQ9Y3D0 163 aa16.83■□□□□ 0.28
VPS28-213ENST00000530983 PCDHGA1Q9Y5H4 931 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms