RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SLC35E3Q7Z769 313 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 C17orf78Q8N4C9 275 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 CHRNA10Q9GZZ6 450 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 THYN1Q9P016 225 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 A0A0B4J293 547 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TMEM210A6NLX4 147 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF785A8K8V0 405 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 P01737 135 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 WNT1P04628 370 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 EMP1P54849 157 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TIAL1Q01085 375 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 NR0B2Q15466 257 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC39A5Q6ZMH5 540 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TAS1R1Q7RTX1 841 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 OXGR1Q96P68 337 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 OPN4Q9UHM6 478 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 USP3Q9Y6I4 520 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 PRSS38A1L453 326 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 MFSD2BA6NFX1 497 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TARM1B6A8C7 271 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 C11orf94C9JXX5 98 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 HRO43593 1189 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 HLA-DQA1P01909 254 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 GAPDHP04406 335 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 GUSBP08236 651 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 XAF1Q6GPH4 301 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 H1FOOQ8IZA3 346 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 OR5AS1Q8N127 324 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC16A11Q8NCK7 471 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 GPA33Q99795 319 aa10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TINAGL1Q9GZM7 467 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF346Q9UL40 294 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-217ENST00000512946 TGIF2-C20orf24A0A0A6YYL0 155 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 M0R082 166 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 M0R296 226 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 HMGN4O00479 90 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 UQCRFS1P47985 274 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 LINC00469Q8N7U9 141 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 OR10AD1Q8NGE0 317 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 WBP2Q969T9 261 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 MOB3AQ96BX8 217 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 KLF16Q9BXK1 252 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 WIPI2Q9Y4P8 454 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 KLRC4-KLRK1H3BQV0 150 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CAMPP49913 170 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 YBX1P67809 324 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SOX4Q06945 474 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 ZNF687Q8N1G0 1237 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 PFN4Q8NHR9 129 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CLDN23Q96B33 292 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC22A13Q9Y226 551 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CLTCQ00610 1675 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 IGKV6D-21A0A0A0MT36 114 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CTXND1A0A1B0GTU2 59 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SNURFLB1AK76 121 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 KLK8O60259 260 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CRYBB2P43320 205 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 RGRP47804 291 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CLN3Q13286 438 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CD300LDQ6UXZ3 194 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 RBM45Q8IUH3 476 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SOX21Q9Y651 276 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 C3orf85A0A1B0GTC6 90 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 OOEPA6NGQ2 149 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 TMPRSS11DO60235 418 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 NDUFB7P17568 137 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CEBPBP17676 345 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SERF2P84101 59 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SLC25A35Q3KQZ1 300 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 C10orf126Q8N4M7 172 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 CDX2Q99626 313 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SRD5A3Q9H8P0 318 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 SEBOXQ9HB31 216 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 LIPGQ9Y5X9 500 aa10.1□□□□□ -0.79
LIMCH1-217ENST00000512946 MPTX1A8MV57 137 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 HPXP02790 462 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 GRPP07492 148 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 GLRA1P23415 457 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 KIR2DL1P43626 348 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 KIR2DL2P43627 348 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 MORN1Q5T089 497 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 RIPPLY2Q5TAB7 128 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 RDH5Q92781 318 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 LPAR5Q9H1C0 372 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 METTL1Q9UBP6 276 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 ANXA10Q9UJ72 324 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 MAP2P11137 1827 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 ZBTB42B2RXF5 422 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 CRYABP02511 175 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 Q6ZSR6 202 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 PARS2Q7L3T8 475 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 PDPNQ86YL7 162 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 OR1P1Q8NH06 330 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 ZCCHC14Q8WYQ9 949 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 FER1L6-AS2Q96M78 137 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 DERL3Q96Q80 235 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 INSM2Q96T92 566 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 NRIP2Q9BQI9 281 aa10.09□□□□□ -0.79
LIMCH1-217ENST00000512946 MRPL37Q9BZE1 423 aaKnown RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms