RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MRPL22Q9NWU5 206 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-216ENST00000512820 LIPT2A6NK58 231 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 JMJD6Q6NYC1 403 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 PUSL1Q8N0Z8 303 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF721Q8TF20 911 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 PECRQ9BY49 303 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 CALHM2Q9HA72 323 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 BOKQ9UMX3 212 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 SLCO1B1Q9Y6L6 691 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF646O15015 1829 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 IGLV1-36A0A0B4J1U3 117 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 MED19A0JLT2 244 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF814B7Z6K7 855 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 PIAS2O75928 621 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 TTRP02766 147 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 CRYBA1P05813 215 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 BCKDHBP21953 392 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 RFC3P40938 356 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 MSMO1Q15800 293 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 GAB4Q2WGN9 574 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF260Q3ZCT1 412 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 SLC25A26Q70HW3 274 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 SYT13Q7L8C5 426 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 TMEM123Q8N131 208 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 BHLHE23Q8NDY6 225 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 HEXA-AS1Q9H8Q6 139 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 GNG13Q9P2W3 67 aa7.46□□□□□ -1.22
LIMCH1-216ENST00000512820 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 ABCD4O14678 606 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 LMX1BO60663 402 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CLDN1O95832 211 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 GLULP15104 373 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 B4GALT1P15291 398 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 PDCD1Q15116 288 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 ANKRD37Q7Z713 158 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 FAM24BQ8N5W8 94 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 AKR7LQ8NHP1 331 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 SPSB1Q96BD6 273 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 PLK3Q9H4B4 646 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A0U1RQK1 487 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 OR5H15A6NDH6 313 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF98A6NK75 572 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CEBPZOSA8MTT3 80 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 TNFSF11O14788 317 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 MT-ND4LP03901 98 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 RD3LP0DJH9 198 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 ICAM2P13598 275 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 MPGP29372 298 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 EGR4Q05215 589 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CLEC9AQ6UXN8 241 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 SLC22A18ASQ8N1D0 253 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 SDSLQ96GA7 329 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 HS3ST1O14792 307 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 EFSO43281 561 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 TUSC2O75896 110 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CST7O76096 145 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CTXN2P0C2S0 81 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 IL11P20809 199 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 IL2RGP31785 369 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 TESK1Q15569 626 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 ADIRFQ15847 76 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 C1orf100Q5SVJ3 147 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 LCN15Q6UWW0 184 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 OR2AE1Q8NHA4 323 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 HINT2Q9BX68 163 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A087WZY1 265 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 CXCL13O43927 109 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 OR5AC1P0C628 307 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 FABP9Q0Z7S8 132 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 SURF2Q15527 256 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 BRICD5Q6PL45 260 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 LINC00114Q6XXX2 140 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 C1orf87Q8N0U7 546 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 C15orf54Q8N8G6 183 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 OR6X1Q8NH79 312 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 OR10J5Q8NHC4 309 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 INTS12Q96CB8 462 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 RSPO3Q9BXY4 272 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 NAA60Q9H7X0 242 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 KCNMB2Q9Y691 235 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 PLXNA3P51805 1871 aa7.45□□□□□ -1.22
LIMCH1-216ENST00000512820 A0A087WV48 116 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 A8MXK9 166 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 GLAP06280 429 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 IGHV4-34P06331 123 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 CTSDP07339 412 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 SPP1P10451 314 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 EIF2S3P41091 472 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 HOXA1P49639 335 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 NAAAQ02083 359 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 COL13A1Q5TAT6 717 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 THNSL2Q86YJ6 484 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 WNT2BQ93097 391 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF576Q9H609 170 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 MYOTQ9UBF9 498 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 POMT1Q9Y6A1 747 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 LAMTOR5O43504 91 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 KCNJ3P48549 501 aa7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 ELLP55199 621 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-216ENST00000512820 SLC16A13Q7RTY0 426 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms