RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 E9PQ18 207 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 TMEM178BH3BS89 294 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 SDHDO14521 159 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 RNF13O43567 381 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 GMDSO60547 372 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 OR5F1O95221 314 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 QDPRP09417 244 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ACADSP16219 412 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 EFNA1P20827 205 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 MSR1P21757 451 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CFHR2P36980 270 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 DDOSTP39656 456 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 PSMB10P40306 273 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 BIDP55957 195 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 BRWD1-AS2P59051 145 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 PPP1CBP62140 327 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 GNB2P62879 340 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 PAX2Q02962 417 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 EMX1Q04741 257 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 ST3GAL3Q11203 375 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 BNIP2Q12982 314 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 AQP6Q13520 282 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 SCARB2Q14108 478 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 NSUN5P1Q3KNT7 163 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ZNF404Q494X3 552 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 PABPC1L2AQ5JQF8 200 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ARMC4Q5T2S8 1044 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 AVPI1Q5T686 147 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 METTL21CQ5VZV1 264 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 NCR3LG1Q68D85 454 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 GPR139Q6DWJ6 353 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ZNF774Q6NX45 483 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 KCTD8Q6ZWB6 473 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CCDC80Q76M96 950 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CPLX4Q7Z7G2 160 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ADCK1Q86TW2 530 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 MYPOPQ86VE0 399 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 CPOQ8IVL8 374 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 FTMTQ8N4E7 242 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 C10orf53Q8N6V4 93 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ZSCAN4Q8NAM6 433 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 OR4K5Q8NGD3 323 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 OR4C15Q8NGM1 316 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 OR11L1Q8NGX0 322 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 AGR3Q8TD06 166 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 APOBEC3DQ96AK3 386 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 ZNF582Q96NG8 517 aaPredicted RBP3.17□□□□□ -1.9
USP54-217ENST00000498213 ARHGDIGQ99819 225 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CCDC28BQ9BUN5 200 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 OR2H1Q9GZK4 316 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 HDHD2Q9H0R4 259 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CSTL1Q9H114 145 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 SCRT2Q9NQ03 307 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 FAM118AQ9NWS6 357 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 PPP1R14DQ9NXH3 145 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 TAS2R5Q9NYW4 299 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 ERVK-18Q9QC07 812 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 CLN8Q9UBY8 286 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 HSPB7Q9UBY9 170 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 KPTNQ9Y664 436 aa3.17□□□□□ -1.9
USP54-217ENST00000498213 TRAV38-1A0A0B4J264 116 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 A0A0G2JND7 137 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 A0A1W2PPH5 198 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 ISPDA4D126 451 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 C5orf49A4QMS7 147 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 CEACAM18A8MTB9 384 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 IQCF6A8MYZ5 107 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 ZNF879B4DU55 563 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 TIMM8AO60220 97 aaPredicted RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 HPRP00739 348 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 ALDOBP05062 364 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 FBP1P09467 338 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 IGHV4-38-2P0DP08 117 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 PRG2P13727 222 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 HLA-DOBP13765 273 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 RPS2P15880 293 aaKnown RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 MUC1P15941 1255 aaPredicted RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 TCN1P20061 433 aaPredicted RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 CFL1P23528 166 aaKnown RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 HTR2AP28223 471 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 CRABP1P29762 137 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 SLC6A1P30531 599 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 CDKN2CP42773 168 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 PITPNBP48739 271 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 HOXA1P49639 335 aaPredicted RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 BLVRAP53004 296 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 UGT2B15P54855 530 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 AQP5P55064 265 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 RPL27P61353 136 aaKnown RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 LCN2P80188 198 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 PSG4Q00888 419 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 MAD2L1BPQ15013 274 aaPredicted RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 RBMY1FQ15415 496 aaKnown RBP3.16□□□□□ -1.9
USP54-217ENST00000498213 DEFB112Q30KQ8 113 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 METTL11BQ5VVY1 283 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 DNM1P34Q6PK57 102 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 WDR88Q6ZMY6 472 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 ARPINQ7Z6K5 226 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 NFE4Q86UQ8 179 aa3.16□□□□□ -1.9
USP54-217ENST00000498213 TMEM219Q86XT9 240 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms