RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PRAMEF7Q5VXH5 474 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 XAF1Q6GPH4 301 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR52W1Q6IF63 320 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FAM151BQ6UXP7 276 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 LANCL3Q6ZV70 420 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 KCTD9Q7L273 389 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 STRADAQ7RTN6 431 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PRSS48Q7RTY5 328 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NUFIP2Q7Z417 695 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GRINAQ7Z429 371 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HSD17B13Q7Z5P4 300 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 VTCN1Q7Z7D3 282 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PHF13Q86YI8 300 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 WDFY1Q8IWB7 410 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SKA3Q8IX90 412 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PUSL1Q8N0Z8 303 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CBR4Q8N4T8 237 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DHRSXQ8N5I4 330 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SAMD12Q8N8I0 201 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NHLRC2Q8NBF2 726 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 UBAC2Q8NBM4 344 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ST6GALNAC3Q8NDV1 305 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM104Q8NE00 496 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FAM71CQ8NEG0 241 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR9Q1Q8NGQ5 310 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR11L1Q8NGX0 322 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR10K1Q8NGX5 313 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR2G2Q8NGZ5 317 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR4C6Q8NH72 309 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 COQ8AQ8NI60 647 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 C8orf46Q8TAG6 207 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NUBPLQ8TB37 319 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO25Q8TCJ0 367 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DYNC2LI1Q8TCX1 351 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ABHD3Q8WU67 409 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MITD1Q8WV92 249 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ITLN1Q8WWA0 313 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DNAJB3Q8WWF6 145 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM234Q8WY98 164 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RPL3LQ92901 407 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ART4Q93070 314 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HGDQ93099 445 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MR1Q95460 341 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FAM46BQ96A09 425 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ELSPBP1Q96BH3 223 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 YIPF6Q96EC8 236 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 C16orf58Q96GQ5 468 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CDKN2AIPNLQ96HQ2 116 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 C12orf66Q96MD2 445 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 WFIKKN1Q96NZ8 548 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 KCNK16Q96T55 309 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SORT1Q99523 831 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PRRT1Q99946 306 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 LXNQ9BS40 222 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMED9Q9BVK6 235 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DDA1Q9BW61 102 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TSSK1BQ9BXA7 367 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SNHG12Q9BXW3 62 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SLC39A8Q9C0K1 460 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SLIRPQ9GZT3 109 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SRRQ9GZT4 340 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SLC5A7Q9GZV3 580 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FAM96AQ9H5X1 160 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FNDC4Q9H6D8 234 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM38AQ9H6F2 299 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PTGES2Q9H7Z7 377 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NMNAT1Q9HAN9 279 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CACYBPQ9HB71 228 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 LPAR2Q9HBW0 351 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FAM49BQ9NUQ9 324 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MED9Q9NWA0 146 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PAK1IP1Q9NWT1 392 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DUS2Q9NX74 493 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 KLHL28Q9NXS3 571 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SCN3BQ9NY72 215 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PLEK2Q9NYT0 353 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PTTG3PQ9NZH4 202 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CNIH4Q9P003 139 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 B4GALT7Q9UBV7 327 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF230Q9UIE0 474 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PHF11Q9UIL8 331 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IKZF3Q9UKT9 509 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF346Q9UL40 294 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GSTK1Q9Y2Q3 226 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMED7Q9Y3B3 224 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO7Q9Y3I1 522 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TBL2Q9Y4P3 447 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RBM7Q9Y580 266 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MAB21L2Q9Y586 359 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SLCO1B1Q9Y6L6 691 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MCM3APO60318 1980 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 LAMA1P25391 3075 aa1.65□□□□□ -2.14
HMGB1-208ENST00000490788 THADAQ6YHU6 1953 aa1.65□□□□□ -2.14
HMGB1-208ENST00000490788 PCLOQ9Y6V0 5065 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TRAV26-1A0A087WT03 109 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LOC102724200A0A096LPH7 203 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 A0A0A6YYC8 382 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TRBV5-4A0A0C4DH59 114 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TRBV2A0A0J9YWF9 115 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1B0GV72 72 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms