RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 AP3M1Q9Y2T2 418 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 EDF1O60869 148 aaKnown RBP12.93□□□□□ -0.34
USP48-210ENST00000489108 GYPBP06028 91 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 DLX6P56179 175 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 KRT72Q14CN4 511 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 OR4X2Q8NGF9 303 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 RCN3Q96D15 328 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 PGAM5Q96HS1 289 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 OR51I2Q9H344 312 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 ABCB9Q9NP78 766 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 INTS9Q9NV88 658 aaKnown RBP12.93□□□□□ -0.34
USP48-210ENST00000489108 CD300AQ9UGN4 299 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 HILPDAQ9Y5L2 63 aa12.93□□□□□ -0.34
USP48-210ENST00000489108 C17orf98A8MV24 154 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 MTRF1O75570 445 aaKnown RBP12.92□□□□□ -0.34
USP48-210ENST00000489108 GSSP48637 474 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 OR12D2P58182 307 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 SLC34A1Q06495 639 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 DYNC1I2Q13409 638 aaKnown RBP12.92□□□□□ -0.34
USP48-210ENST00000489108 EIF2B1Q14232 305 aaKnown RBP12.92□□□□□ -0.34
USP48-210ENST00000489108 DMRTC1Q5HYR2 192 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 ZNF626Q68DY1 528 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 UNQ9370/PRO34162Q6UXP9 181 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 ETV3LQ6ZN32 361 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 CALHM1Q8IU99 346 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 ZDHHC23Q8IYP9 409 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 SLC37A3Q8NCC5 494 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 OR11H6Q8NGC7 330 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 OR13D1Q8NGV5 346 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 ZNF671Q8TAW3 534 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 TFAP2CQ92754 450 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 HIST1H2AAQ96QV6 131 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 ASCL2Q99929 193 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 SIKE1Q9BRV8 207 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 C1orf21Q9H246 121 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 EGLN3Q9H6Z9 239 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 SAR1AQ9NR31 198 aa12.92□□□□□ -0.34
USP48-210ENST00000489108 STAB2Q8WWQ8 2551 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 FAM90A22PA8MWA6 464 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 ZNF732B4DXR9 585 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 NME4O00746 187 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 GADD45GO95257 159 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 APOC1P02654 83 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 LPLP06858 475 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 PIPP12273 146 aaPredicted RBP12.91□□□□□ -0.34
USP48-210ENST00000489108 PRDX2P32119 198 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 CEBPDP49716 269 aaPredicted RBP12.91□□□□□ -0.34
USP48-210ENST00000489108 DGCR2P98153 550 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 ACP7Q6ZNF0 438 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 ARPINQ7Z6K5 226 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 ZNF561Q8N587 486 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 FAM86B1Q8N7N1 296 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 AQP3Q92482 292 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 LYZL4Q96KX0 146 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 ZNF649Q9BS31 505 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 MCRIP2Q9BUT9 160 aaKnown RBP12.91□□□□□ -0.34
USP48-210ENST00000489108 ABHD6Q9BV23 337 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 RGCCQ9H4X1 137 aa12.91□□□□□ -0.34
USP48-210ENST00000489108 LSM4Q9Y4Z0 139 aaKnown RBP12.91□□□□□ -0.34
USP48-210ENST00000489108 MEX3AA1L020 520 aaKnown RBP12.9□□□□□ -0.34
USP48-210ENST00000489108 H0YHG0 523 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 SLC1A7O00341 560 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 ZFPL1O95159 310 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 CLUP10909 449 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 AZGP1P25311 298 aaKnown RBP12.9□□□□□ -0.34
USP48-210ENST00000489108 GNG3P63215 75 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 SF3A3Q12874 501 aaKnown RBP eCLIP12.9□□□□□ -0.34
USP48-210ENST00000489108 ABCA11PQ4W5N1 156 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 CEP78Q5JTW2 689 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 ZNF770Q6IQ21 691 aaPredicted RBP12.9□□□□□ -0.34
USP48-210ENST00000489108 LCN8Q6JVE9 175 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 MUC7Q8TAX7 377 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 GNPDA2Q8TDQ7 276 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 RNF133Q8WVZ7 376 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 ATP6V1G3Q96LB4 118 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 ZNF488Q96MN9 340 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 AMELYQ99218 206 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 RASL12Q9NYN1 266 aa12.9□□□□□ -0.34
USP48-210ENST00000489108 H3BUI4 141 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 CD24P25063 80 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 THBS3P49746 956 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 SMIM11AP58511 58 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 TSPAN31Q12999 210 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 DOC2BQ14184 412 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 HAGHLQ6PII5 290 aaPredicted RBP12.89□□□□□ -0.35
USP48-210ENST00000489108 PIGWQ7Z7B1 504 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 OR6K6Q8NGW6 343 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 MRGBPQ9NV56 204 aa12.89□□□□□ -0.35
USP48-210ENST00000489108 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.89□□□□□ -0.35
USP48-210ENST00000489108 ZMAT5Q9UDW3 170 aaKnown RBP12.89□□□□□ -0.35
USP48-210ENST00000489108 HUWE1Q7Z6Z7 4374 aaKnown RBP12.89□□□□□ -0.35
USP48-210ENST00000489108 SH2D7A6NKC9 451 aaPredicted RBP12.88□□□□□ -0.35
USP48-210ENST00000489108 SLC22A2O15244 555 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 TK1P04183 234 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 SPI1P17947 270 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 IFNGR2P38484 337 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 OPRL1P41146 370 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 CRMP1Q14194 572 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 CEACAM21Q3KPI0 293 aa12.88□□□□□ -0.35
USP48-210ENST00000489108 OR51D1Q8NGF3 324 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms