RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 NAXEQ8NCW5 288 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 LINC00052Q96N35 136 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 C1QTNF6Q9BXI9 259 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 SPRR3Q9UBC9 169 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 VSIG4Q9Y279 399 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 MRPS18CQ9Y3D5 142 aaKnown RBP12.6□□□□□ -0.39
CHD3-211ENST00000481999 MRPL33O75394 65 aaKnown RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 SPDEFO95238 335 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 ACKR3P25106 362 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 ZNF93P35789 620 aaPredicted RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 GRB2P62993 217 aaKnown RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 AWAT2Q6E213 333 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 C17orf107Q6ZR85 190 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 RHOUQ7L0Q8 258 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 OVCH2Q7RTZ1 564 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 C1QL2Q7Z5L3 287 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 LYG2Q86SG7 212 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 OR14K1Q8NGZ2 314 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 PDCD10Q9BUL8 212 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 BANF2Q9H503 90 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 LDAHQ9H6V9 325 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 C12orf49Q9H741 205 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 IFT46Q9NQC8 304 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 COMMD9Q9P000 198 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 A0A1B0GW55 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 SYNGR3O43761 229 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HCKP08631 526 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L2P0CJ85 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L3P0CJ86 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L4P0CJ87 422 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L5P0CJ88 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L6P0CJ89 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4L7P0CJ90 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HLA-GP17693 338 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 ZBTB25P24278 435 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HIST1H3AP68431 136 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HIST2H3PS2Q5TEC6 136 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 FAHD2BQ6P2I3 314 aaPredicted RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 CRIP3Q6Q6R5 217 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HIST2H3AQ71DI3 136 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 HSD17B13Q7Z5P4 300 aaPredicted RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 NUDCD2Q8WVJ2 157 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 FAHD2AQ96GK7 314 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 PRRG4Q9BZD6 226 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 DUX4Q9UBX2 424 aa12.59□□□□□ -0.39
CHD3-211ENST00000481999 ZNF230Q9UIE0 474 aaPredicted RBP12.59□□□□□ -0.39
CHD3-211ENST00000481999 IL2RAP01589 272 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 FGF2P09038 288 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 LIPCP11150 499 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 SLC25A4P12235 298 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 NR2C1P13056 603 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 OTX1P32242 354 aaPredicted RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 ZNF345Q14585 488 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 UBE2V2Q15819 145 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 SLC16A14Q7RTX9 510 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 NUFIP2Q7Z417 695 aaKnown RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 KCNRGQ8N5I3 272 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 ZFP62Q8NB50 900 aaPredicted RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 OR10K1Q8NGX5 313 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 OR10R2Q8NGX6 335 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 OR1S1Q8NH92 325 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 PIGTQ969N2 578 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 SLC25A32Q9H2D1 315 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 KLF13Q9Y2Y9 288 aaPredicted RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 SPTBN4Q9H254 2564 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 TMEM14DPA8MWL7 114 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 KLRC4-KLRK1H3BQV0 150 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 TPD52L2O43399 206 aaKnown RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 OR2F2O95006 317 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 CHRM2P08172 466 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 HOXD4P09016 255 aaPredicted RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 SPINK2P20155 84 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 CRYGSP22914 178 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 HTR5AP47898 357 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 TNFSF10P50591 281 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 TAGLNQ01995 201 aaKnown RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 OR2F1Q13607 317 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 ZNF101Q8IZC7 436 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 GVQW1Q8N7I0 195 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 SPERTQ8NA61 448 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 CPEB3Q8NE35 698 aaKnown RBP12.58□□□□□ -0.4
CHD3-211ENST00000481999 MITD1Q8WV92 249 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 SGK3Q96BR1 496 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 IP6K3Q96PC2 410 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 CST11Q9H112 138 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 DLL3Q9NYJ7 618 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 TNFSF18Q9UNG2 199 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 PIGLQ9Y2B2 252 aa12.58□□□□□ -0.4
CHD3-211ENST00000481999 HLA-HP01893 362 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 RLN2P04090 185 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 CD46P15529 392 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 CCNOP22674 350 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 PPP1R1AQ13522 171 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 SLC10A1Q14973 349 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 DEFB109BQ30KR1 87 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 OR52W1Q6IF63 320 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 C11orf87Q6NUJ2 197 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 OR2W3Q7Z3T1 314 aa12.57□□□□□ -0.4
CHD3-211ENST00000481999 EIF4E3Q8N5X7 224 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms