RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 DUX4L4P0CJ87 422 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 DUX4L5P0CJ88 424 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 DUX4L6P0CJ89 424 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 DUX4L7P0CJ90 424 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 ACTA2P62736 377 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 ACTG2P63267 376 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 SRSF2Q01130 221 aaKnown RBP12.96□□□□□ -0.33
HMGA1-206ENST00000478214 PAX8Q06710 450 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 KLHL22Q53GT1 634 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 FDX2Q6P4F2 183 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 HAGHLQ6PII5 290 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-206ENST00000478214 DUX4L9Q6RFH8 374 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-206ENST00000478214 TEX29Q8N6K0 151 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 OR5T2Q8NGG2 359 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 NANPQ8TBE9 248 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 AQP3Q92482 292 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 MRPL48Q96GC5 212 aaKnown RBP12.96□□□□□ -0.33
HMGA1-206ENST00000478214 ISG20L2Q9H9L3 353 aaKnown RBP12.96□□□□□ -0.33
HMGA1-206ENST00000478214 PLEKHA1Q9HB21 404 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 INPP5EQ9NRR6 644 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 SNTG1Q9NSN8 517 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 ERVK13-1Q9NX77 482 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 KAAG1Q9UBP8 84 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 DUX4Q9UBX2 424 aa12.96□□□□□ -0.33
HMGA1-206ENST00000478214 KIR2DS1A0A191URI9 304 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 PQLC2LA1A4F0 135 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 ANKRD61A6NGH8 418 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 TMPRSS2O15393 492 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 FSHBP01225 129 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 AMY2BP19961 511 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 EPHA1P21709 976 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 NPY4RP50391 375 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 TMEM244Q5VVB8 128 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 STUMQ69YW2 141 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 BTNL3Q6UXE8 466 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 SYS1Q8N2H4 156 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 FGFRL1Q8N441 504 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 FAM216BQ8N7L0 139 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 CCDC54Q8NEL0 328 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 C12orf43Q96C57 262 aaKnown RBP12.95□□□□□ -0.34
HMGA1-206ENST00000478214 NUDT16L1Q9BRJ7 211 aaKnown RBP12.95□□□□□ -0.34
HMGA1-206ENST00000478214 MRI1Q9BV20 369 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 DNAJB11Q9UBS4 358 aa12.95□□□□□ -0.34
HMGA1-206ENST00000478214 OR4C45A6NMZ5 311 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 E9PI62 339 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 DVL1O14640 695 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 TFF1P04155 84 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 GNAO1P09471 354 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 LIMS3P0CW19 117 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 LIMS4P0CW20 117 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 GLRA1P23415 457 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 CAPGP40121 348 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 HAAOP46952 286 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 CCR9P51686 369 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 SLC34A1Q06495 639 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 ALKBH1Q13686 389 aaKnown RBP12.94□□□□□ -0.34
HMGA1-206ENST00000478214 UBE2V2Q15819 145 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF573Q86YE8 665 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 SETD9Q8NE22 299 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 OR10AC1Q8NH08 325 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF671Q8TAW3 534 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 TRMT10AQ8TBZ6 339 aaKnown RBP12.94□□□□□ -0.34
HMGA1-206ENST00000478214 NPRL2Q8WTW4 380 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 ZNF488Q96MN9 340 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 MYCBPQ99417 103 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-206ENST00000478214 CHST5Q9GZS9 411 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 OCEL1Q9H607 264 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 FGF20Q9NP95 211 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-206ENST00000478214 DNHD1Q96M86 4753 aa12.94□□□□□ -0.34
HMGA1-206ENST00000478214 FAM230AA0A1W2PPH8 454 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 H0YAE9 185 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 J3QT63 122 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 SYNGR1O43759 233 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ENSAO43768 121 aaKnown RBP12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ISG15P05161 165 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 SELLP14151 372 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 IL18R1Q13478 541 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 KLF17Q5JT82 389 aaPredicted RBP12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ATPAF1Q5TC12 328 aaPredicted RBP12.93□□□□□ -0.34
HMGA1-206ENST00000478214 CD276Q5ZPR3 534 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 SLC36A1Q7Z2H8 476 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ANGPTL5Q86XS5 388 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 OR51A4Q8NGJ6 313 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ANGPTL6Q8NI99 470 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ST8SIA4Q92187 359 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 ADAT3Q96EY9 351 aaPredicted RBP12.93□□□□□ -0.34
HMGA1-206ENST00000478214 NLKQ9UBE8 527 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 SLC7A11Q9UPY5 501 aa12.93□□□□□ -0.34
HMGA1-206ENST00000478214 OR2AT4A6NND4 320 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 RNF212BA8MTL3 300 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 TCF21O43680 179 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 GATBO75879 557 aaKnown RBP12.92□□□□□ -0.34
HMGA1-206ENST00000478214 RGS9O75916 674 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-206ENST00000478214 DCKP27707 260 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 TGM4P49221 684 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 ETV1P50549 477 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 SCGB2A2Q13296 93 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 IKZF1Q13422 519 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 ARMCX4Q5H9R4 360 aa12.92□□□□□ -0.34
HMGA1-206ENST00000478214 BTN2A1Q7KYR7 527 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms