RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ELL3Q9HB65 397 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-204ENST00000475218 NOX4Q9NPH5 578 aa11.59□□□□□ -0.55
UPF3A-204ENST00000475218 NLKQ9UBE8 527 aa11.59□□□□□ -0.55
UPF3A-204ENST00000475218 IKZF2Q9UKS7 526 aa11.59□□□□□ -0.55
UPF3A-204ENST00000475218 MAB21L2Q9Y586 359 aa11.59□□□□□ -0.55
UPF3A-204ENST00000475218 TMEM14AQ9Y6G1 99 aa11.59□□□□□ -0.55
UPF3A-204ENST00000475218 OR2AT4A6NND4 320 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 RNASEK-C17orf49H0YIS7 233 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 SIGLEC5O15389 551 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 NDUFB3O43676 98 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 IGHV4-59P01825 116 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ACAA1P09110 424 aaPredicted RBP11.58□□□□□ -0.56
UPF3A-204ENST00000475218 PSG2P11465 335 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ATP6V1B1P15313 513 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 IL13RA1P78552 427 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF684Q5T5D7 378 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 C1orf146Q5VVC0 180 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ZDHHC13Q8IUH4 622 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ELMOD2Q8IZ81 293 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 KIR3DL3Q8N743 410 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 OR5A2Q8NGI9 324 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 RNF166Q96A37 237 aaPredicted RBP11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF488Q96MN9 340 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 GABARAPL3Q9BY60 117 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 CLN6Q9NWW5 311 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 C1RLQ9NZP8 487 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 ONECUT1Q9UBC0 465 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 OAZ3Q9UMX2 235 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 SLC22A13Q9Y226 551 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 PIGLQ9Y2B2 252 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 R4GMQ9 66 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 V9GYS6 101 aa11.58□□□□□ -0.56
UPF3A-204ENST00000475218 SLC22A31A6NKX4 558 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 SPRY1O43609 319 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-204ENST00000475218 SYNGR1O43759 233 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 DHRS3O75911 302 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 APOL3O95236 402 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 RIPPLY1Q0D2K3 151 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 KLRD1Q13241 179 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 ZNF829Q3KNS6 432 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-204ENST00000475218 PRR31Q5SQ13 230 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 ZBTB37Q5TC79 503 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 HAGHLQ6PII5 290 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-204ENST00000475218 METAP1DQ6UB28 335 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-204ENST00000475218 FIP1L1Q6UN15 594 aaKnown RBP11.57□□□□□ -0.56
UPF3A-204ENST00000475218 SHISA2Q6UWI4 295 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 MOB3CQ70IA8 216 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 ZNRF1Q8ND25 227 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 OR14K1Q8NGZ2 314 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 DMRTB1Q96MA1 342 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 SIRT7Q9NRC8 400 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 DNAJB11Q9UBS4 358 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 OR52A1Q9UKL2 312 aa11.57□□□□□ -0.56
UPF3A-204ENST00000475218 A0A1B0GVI7 797 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 A6NIN4 97 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 OR5B21A6NL26 309 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 LOC110117498-PIK3R3F6TDL0 507 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 GPR37O15354 613 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 SRSF4Q08170 494 aaKnown RBP11.56□□□□□ -0.56
UPF3A-204ENST00000475218 PLCXD3Q63HM9 321 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 COMMD2Q86X83 199 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 LDLRAD3Q86YD5 345 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 PNKDQ8N490 385 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 TMEM86BQ8N661 226 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 OR51G2Q8NGK0 314 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 ITFG2Q969R8 447 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 PRRG3Q9BZD7 231 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 SLC25A10Q9UBX3 287 aaPredicted RBP11.56□□□□□ -0.56
UPF3A-204ENST00000475218 MMP24Q9Y5R2 645 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 A0A1W2PQL4 384 aaPredicted RBP11.56□□□□□ -0.56
UPF3A-204ENST00000475218 PQLC2LA1A4F0 135 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 E9PQ18 207 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 MTRF1O75570 445 aaKnown RBP11.56□□□□□ -0.56
UPF3A-204ENST00000475218 CCL1P22362 96 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 GLRA1P23415 457 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 IER3P46695 156 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 CAV3P56539 151 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 EGR3Q06889 387 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 LRRC10Q5BKY1 277 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 HCP5Q6MZN7 132 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 GID4Q8IVV7 300 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 CD177Q8N6Q3 437 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 POC1AQ8NBT0 407 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 H1FXQ92522 213 aaKnown RBP11.56□□□□□ -0.56
UPF3A-204ENST00000475218 UBE2FQ969M7 185 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 SDSLQ96GA7 329 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 HIST1H2AAQ96QV6 131 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 MNTQ99583 582 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 TBX5Q99593 518 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 OSBPL10Q9BXB5 764 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 GPR173Q9NS66 373 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 ENPP5Q9UJA9 477 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 LRRC42Q9Y546 428 aa11.56□□□□□ -0.56
UPF3A-204ENST00000475218 NKX6-3A6NJ46 265 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 POM121CA8CG34 1229 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 NRASP01111 189 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 HTR1FP30939 366 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 KRTAP10-3P60369 221 aa11.55□□□□□ -0.56
UPF3A-204ENST00000475218 BCL2L15Q5TBC7 163 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms