RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	PPIAL4G	P0DN37	164 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	DBT	P11182	482 aa	Known RBP	19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	HILS1	P60008	231 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	FGF12	P61328	243 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	ISL1	P61371	349 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	RCN1	Q15293	331 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	CDON	Q4KMG0	1287 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	USP43	Q70EL4	1123 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	PRSS35	Q8N3Z0	413 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	RHOXF1	Q8NHV9	184 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	AQP3	Q92482	292 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	UPRT	Q96BW1	309 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	JMJD8	Q96S16	334 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	ZNF69	Q9UC07	566 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	EXOG	Q9Y2C4	368 aa	Known RBP	19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	MXRA5	Q9NR99	2828 aa		19.93	■□□□□ 0.78
CPNE1-223	ENST00000475146	LOC107986453	A0A1B0GWG9	222 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	UBC	P0CG48	685 aa	Known RBP	19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	KIR3DL2	P43630	455 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	OR12D2	P58182	307 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	IKZF1	Q13422	519 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146		Q6ZSR3	168 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	BTN2A1	Q7KYR7	527 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	KCTD20	Q7Z5Y7	419 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	FGFRL1	Q8N441	504 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	PNLDC1	Q8NA58	520 aa	Known RBP	19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	TMIGD2	Q96BF3	282 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	MRPL48	Q96GC5	212 aa	Known RBP	19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	RDH12	Q96NR8	316 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	MS4A7	Q9GZW8	240 aa	Predicted RBP	19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	AMBN	Q9NP70	447 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	NLK	Q9UBE8	527 aa		19.92	■□□□□ 0.78
CPNE1-223	ENST00000475146	ANKRD61	A6NGH8	418 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146		J3QLW9	94 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	NDUFB3	O43676	98 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	FCN3	O75636	299 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	LIPF	P07098	398 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	IGHV4-38-2	P0DP08	117 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	ZNF19	P17023	458 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	HAAO	P46952	286 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	ACTA2	P62736	377 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	ACTG2	P63267	376 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	ZNF573	Q86YE8	665 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	CCDC54	Q8NEL0	328 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	OR2G2	Q8NGZ5	317 aa		19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	TRMT10A	Q8TBZ6	339 aa	Known RBP	19.91	■□□□□ 0.78
CPNE1-223	ENST00000475146	PQLC2L	A1A4F0	135 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	ANKRD65	E5RJM6	399 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146		J3QT63	122 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	ECD	O95905	644 aa	Predicted RBP	19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	TFF1	P04155	84 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	HTR1A	P08908	422 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	SELL	P14151	372 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	AMY2B	P19961	511 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	LRRC10	Q5BKY1	277 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	LPCAT4	Q643R3	524 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	RBMS3	Q6XE24	437 aa	Known RBP	19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	RDH10	Q8IZV5	341 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	BCL6B	Q8N143	479 aa	Predicted RBP	19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	NPRL2	Q8WTW4	380 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	C4orf36	Q96KX1	117 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	PCGF1	Q9BSM1	259 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	ALG8	Q9BVK2	526 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	DNTTIP1	Q9H147	329 aa		19.9	■□□□□ 0.78
CPNE1-223	ENST00000475146	OR2AT4	A6NND4	320 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	ZNF879	B4DU55	563 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	FADS2	O95864	444 aa	Known RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	PEX2	P28328	305 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	GABRA2	P47869	451 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	C11orf91	Q3C1V1	193 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	ATPAF1	Q5TC12	328 aa	Predicted RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	METTL11B	Q5VVY1	283 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	LHFPL3	Q86UP9	236 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	SIGLECL1	Q8N7X8	197 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	ANGPTL6	Q8NI99	470 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	APH1B	Q8WW43	257 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	RNF166	Q96A37	237 aa	Predicted RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	MYCBP	Q99417	103 aa	Predicted RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	RPUSD1	Q9UJJ7	312 aa	Known RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	SLC7A11	Q9UPY5	501 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	MYRF	Q9Y2G1	1151 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	POLDIP2	Q9Y2S7	368 aa		19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	RPL36	Q9Y3U8	105 aa	Known RBP	19.89	■□□□□ 0.77
CPNE1-223	ENST00000475146	FAM230A	A0A1W2PPH8	454 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	TRIM77	I1YAP6	450 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	SYNGR1	O43759	233 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	GATB	O75879	557 aa	Known RBP	19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	TOX4	O94842	621 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	SFTPB	P07988	381 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	TGM4	P49221	684 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	IL13RA1	P78552	427 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	TMEM244	Q5VVB8	128 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	ZNF788	Q6ZQV5	615 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	POC1A	Q8NBT0	407 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	ZFAND2B	Q8WV99	257 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	CYGB	Q8WWM9	190 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	MED30	Q96HR3	178 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	ZNF488	Q96MN9	340 aa		19.88	■□□□□ 0.77
CPNE1-223	ENST00000475146	GAFA1	Q96PS6	74 aa		19.88	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 49 ms