RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PPP1R3EQ9H7J1 279 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 MEPEQ9NQ76 525 aaPredicted RBP6.2□□□□□ -1.42
USP54-211ENST00000474929 NDE1Q9NXR1 346 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 ING3Q9NXR8 418 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 RASL12Q9NYN1 266 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 KIAA1456Q9P272 454 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 GRHPRQ9UBQ7 328 aa6.2□□□□□ -1.42
USP54-211ENST00000474929 FAT2Q9NYQ8 4349 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 DNAH6Q9C0G6 4158 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 PRSS37A4D1T9 235 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 I3L521 148 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 PSMD9O00233 223 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 AKR7A2O43488 359 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 IGLV1-51P01701 117 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 RBMY1A1P0DJD3 496 aaKnown RBP6.19□□□□□ -1.42
USP54-211ENST00000474929 PSG2P11465 335 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 JUNBP17275 347 aaPredicted RBP6.19□□□□□ -1.42
USP54-211ENST00000474929 CD247P20963 164 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 CD24P25063 80 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 DLX6P56179 175 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 MAGOHP61326 146 aaKnown RBP6.19□□□□□ -1.42
USP54-211ENST00000474929 CDK6Q00534 326 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 BDH1Q02338 343 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 STX3Q13277 289 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 RFX4Q33E94 735 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 SLC36A3Q495N2 470 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 TNFAIP8L3Q5GJ75 292 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 GCNT6Q5T4J0 391 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 ASPHD1Q5U4P2 390 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 OR52W1Q6IF63 320 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 CROCCP2Q86T23 111 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 LNX2Q8N448 690 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 CSNK2A3Q8NEV1 391 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 OR4P4Q8NGL7 312 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 OR2AJ1Q8NGZ0 328 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 MYOZ3Q8TDC0 251 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 ARPC1AQ92747 370 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 MAL2Q969L2 176 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 TMEM133Q9H2Q1 129 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 PLEKHA1Q9HB21 404 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 TMBIM4Q9HC24 238 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 LINC00527Q9UJ94 153 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 ZNF580Q9UK33 172 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 MED31Q9Y3C7 131 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 MPC1Q9Y5U8 109 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 VPS13DQ5THJ4 4388 aa6.19□□□□□ -1.42
USP54-211ENST00000474929 TMEM120BA0PK00 339 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 MAGEA13PA6NCF6 341 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LINC01619G3V211 115 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 BIRC5O15392 142 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 TPST1O60507 370 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 SLC16A7O60669 478 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 MTRF1O75570 445 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 ALDOCP09972 364 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 TMEM11P17152 192 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LBPP18428 481 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 PPIBP23284 216 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 PSMB8P28062 276 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 CRABP1P29762 137 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 SLC1A6P48664 564 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 ABCE1P61221 599 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 MEF2CQ06413 473 aaPredicted RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 TNFRSF9Q07011 255 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 TMEM177Q53S58 311 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LCN12Q6JVE5 192 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LINC00322Q6ZN03 302 aaPredicted RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 ADCK1Q86TW2 530 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 ZNF781Q8N8C0 355 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 ZNF454Q8N9F8 522 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 FAM156AQ8NDB6 213 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 OR2AE1Q8NHA4 323 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 TMEM239Q8WW34 195 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 HRASLS5Q96KN8 279 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 ZNF570Q96NI8 536 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 NRIP2Q9BQI9 281 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 PAPOLGQ9BWT3 736 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 C20orf27Q9GZN8 174 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 AKTIPQ9H8T0 292 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 SP140LQ9H930 580 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 SSU72Q9NP77 194 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 SCRT2Q9NQ03 307 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LIN7CQ9NUP9 197 aaKnown RBP6.18□□□□□ -1.42
USP54-211ENST00000474929 PNPOQ9NVS9 261 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 ADA2Q9NZK5 511 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 CORO2BQ9UQ03 480 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 LHFPL6Q9Y693 200 aa6.18□□□□□ -1.42
USP54-211ENST00000474929 hADV38S2A0JD32 116 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 H7C1C5 153 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 ATP8B1O43520 1251 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 TPPPO94811 219 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 LYPD3O95274 346 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 TK1P04183 234 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 CENPAP49450 140 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 RPL14P50914 215 aaKnown RBP6.17□□□□□ -1.42
USP54-211ENST00000474929 ZP1P60852 638 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 LCN6P62502 163 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 CBX1P83916 185 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 HES1Q14469 280 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 SNAI3Q3KNW1 292 aa6.17□□□□□ -1.42
USP54-211ENST00000474929 C6orf10Q5SRN2 563 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 217.7 ms