RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CDX4O14627 284 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 DIRAS3O95661 229 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 APOC3P02656 99 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 CD59P13987 128 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 FABP6P51161 128 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF75AQ96N20 296 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 C14orf166Q9Y224 244 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 NOVA1P51513 510 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 ZP4Q12836 540 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 RAB12Q6IQ22 244 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 PAQR4Q8N4S7 273 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 OR56B1Q8NGI3 324 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 FOXRED1Q96CU9 486 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 PHB2Q99623 299 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 GON7Q9BXV9 100 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 IL36RNQ9UBH0 155 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 LRP4O75096 1905 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 MEIKINA0A087WXM9 373 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 A0A1B0GUH1 482 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 CXCL2P19875 107 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 PLAC9Q5JTB6 97 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 NUFIP2Q7Z417 695 aaKnown RBP12□□□□□ -0.49
CCDC88A-211ENST00000471947 ZIC4Q8N9L1 334 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 GPX8Q8TED1 209 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 LPAR5Q9H1C0 372 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 MBD2Q9UBB5 411 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 TIMM10BQ9Y5J6 103 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 XRCC2O43543 280 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 IFI6P09912 130 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 SULT1A3P0DMM9 295 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 SULT1A4P0DMN0 295 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 HOXC12P31275 282 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 RBP2P50120 134 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 UBE2NP61088 152 aaKnown RBP12□□□□□ -0.49
CCDC88A-211ENST00000471947 ANGPTL6Q8NI99 470 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 LYZL4Q96KX0 146 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 PRRT1Q99946 306 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 MRI1Q9BV20 369 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 TREM2Q9NZC2 230 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 SEMA5BQ9P283 1151 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 PTPRQQ9UMZ3 2332 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 OR5H14A6NHG9 310 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 MPTX1A8MV57 137 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 PRAF2O60831 178 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 DHRS3O75911 302 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 MPC2O95563 127 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 CA6P23280 308 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 NPBWR2P48146 333 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 THOC7Q6I9Y2 204 aaKnown RBP12□□□□□ -0.49
CCDC88A-211ENST00000471947 SLC22A25Q6T423 547 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 METTL9Q9H1A3 318 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 SLCO5A1Q9H2Y9 848 aa12□□□□□ -0.49
CCDC88A-211ENST00000471947 TPOP07202 933 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 HIST1H1DP16402 221 aaKnown RBP11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 HGFACQ04756 655 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 VRK1Q99986 396 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 PIEZO1Q92508 2521 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 C7orf66A4D0T2 115 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 LRRC3CA6NJW4 275 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 B8ZZF3 427 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 RBMXL2O75526 392 aaKnown RBP11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TRAPPC2P0DI81 140 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TRAPPC2BP0DI82 140 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF766Q5HY98 468 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TEX261Q6UWH6 196 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TMUB2Q71RG4 321 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 FAM173AQ9BQD7 235 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 GPR35Q9HC97 309 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 U3KQ87 197 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TFF1P04155 84 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 APLNRP35414 380 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TMEM50BP56557 158 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 RAP2BP61225 183 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 FBXW5Q969U6 566 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 SLC26A1Q9H2B4 701 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 TMEM231Q9H6L2 316 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF71Q9NQZ8 489 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 ZFHX4Q86UP3 3567 aa11.99□□□□□ -0.49
CCDC88A-211ENST00000471947 GSTZ1O43708 216 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 HERV-K104P61576 105 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 MALLQ13021 153 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 OR2B11Q5JQS5 317 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 FADS6Q8N9I5 356 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 PSMF1Q92530 271 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 CXorf58Q96LI9 332 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 TMEM38BQ9NVV0 291 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 KCNS2Q9ULS6 477 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF732B4DXR9 585 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 KLRC4-KLRK1H3BQV0 150 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 TGM6O95932 706 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 HPP00738 406 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 CLN3Q13286 438 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF626Q68DY1 528 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 GSG1LQ6UXU4 331 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 ASF1BQ9NVP2 202 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 STARD10Q9Y365 291 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 A0A0A6YYD4 124 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 PMS2P2O95744 297 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 C4BPBP20851 252 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 CNR1P21554 472 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms