RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 PPP1CAP62136 330 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 HSP90AB3PQ58FF7 597 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 C22orf42Q6IC83 251 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 CASC1Q6TDU7 716 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 Q6ZSA8 131 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 PPP1R42Q7Z4L9 355 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 HORMAD1Q86X24 394 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 PDPNQ86YL7 162 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 LRRC8AQ8IWT6 810 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 EIF4E3Q8N5X7 224 aaKnown RBP0.35□□□□□ -2.35
UBXN4-207ENST00000471246 OR7G2Q8NG99 324 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 OR4A4PQ8NGN8 299 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 LYPD6BQ8NI32 183 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 ACMSDQ8TDX5 336 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 ZNF606Q8WXB4 792 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 RBPMSQ93062 196 aaKnown RBP0.35□□□□□ -2.35
UBXN4-207ENST00000471246 RPEQ96AT9 228 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 SGTBQ96EQ0 304 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 ZNF75AQ96N20 296 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 TEAD3Q99594 435 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 UQCC2Q9BRT2 126 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 CRACR2AQ9BSW2 395 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 EMC6Q9BV81 110 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 METTL7AQ9H8H3 244 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 SND1-IT1Q9HBX3 110 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 TMEM165Q9HC07 324 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 FAM60AQ9NP50 221 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 OR2S2Q9NQN1 319 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 AGPAT4Q9NRZ5 378 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 CA10Q9NS85 328 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 BLOC1S6Q9UL45 172 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 SLC17A4Q9Y2C5 497 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 RTTNQ86VV8 2226 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 COL7A1Q02388 2944 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 OTOFQ9HC10 1997 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 KMT2AQ03164 3969 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 CHD9Q3L8U1 2897 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 SMARCA4P51532 1647 aa0.35□□□□□ -2.35
UBXN4-207ENST00000471246 LAMB2P55268 1798 aa0.34□□□□□ -2.35
UBXN4-207ENST00000471246 VPS13CQ709C8 3753 aa0.34□□□□□ -2.35
UBXN4-207ENST00000471246 BRD4O60885 1362 aaPredicted RBP0.34□□□□□ -2.35
UBXN4-207ENST00000471246 IGKV1OR2-108A0A075B7D4 117 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TMEM72A0PK05 275 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 BICDL2A1A5D9 508 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 MYBPHLA2RUH7 354 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 GGTLC3B5MD39 225 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 RTEL1-TNFRSF6BF6WH68 1400 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 H7C0C1 242 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 M0R3G1 203 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 NME4O00746 187 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 SLC9A3R1O14745 358 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 EIF3HO15372 352 aaKnown RBP eCLIP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 SLC19A2O60779 497 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CDH16O75309 829 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TRIOO75962 3097 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TACC2O95359 2948 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 LSM8O95777 96 aaKnown RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 IGHV3-53P01767 116 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 HBE1P02100 147 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PRB4P10163 310 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PRPS1L1P21108 318 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PRSS3P35030 304 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 MYCNOSP40205 109 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 LGALS7P47929 136 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ATP5OP48047 213 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PLXNA3P51805 1871 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ATP5G2Q06055 141 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 DNAH14Q0VDD8 3507 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CUL2Q13617 745 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PTPRKQ15262 1439 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ZMYND11Q15326 602 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 SSX2Q16385 188 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 MRPL23Q16540 153 aaKnown RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 XKR7Q5GH72 579 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 MRPL2Q5T653 305 aaKnown RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 HHATQ5VTY9 493 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 MFSD14CQ5VZR4 134 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TMEM236Q5W0B7 351 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TTC23LQ6PF05 361 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 METAP1DQ6UB28 335 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 RGS9BPQ6ZS82 235 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TMEM144Q7Z5S9 345 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 LYPD6Q86Y78 171 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 DEFB123Q8N688 67 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TEX9Q8N6V9 391 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 OR56B2PQ8NGI1 322 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 OR9G4Q8NGQ1 327 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 SFXN5Q8TD22 340 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PRUNE2Q8WUY3 3088 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ITLN2Q8WWU7 325 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ELMO1Q92556 727 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 YIPF6Q96EC8 236 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PEBP4Q96S96 227 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CENPKQ9BS16 269 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 HIGD2AQ9BW72 106 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 TBL1XR1Q9BZK7 514 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ACTR3CQ9C0K3 210 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 BEX1Q9HBH7 125 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CLN6Q9NWW5 311 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 STX18Q9P2W9 335 aaKnown RBP0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms