RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 VENTXO95231 258 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 FADS2O95864 444 aaKnown RBP12.61□□□□□ -0.39
LIMS3-201ENST00000437679 UBCP0CG48 685 aaKnown RBP12.61□□□□□ -0.39
LIMS3-201ENST00000437679 HILS1P60008 231 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 ACTA2P62736 377 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 ACTG2P63267 376 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 RCN1Q15293 331 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 KLF17Q5JT82 389 aaPredicted RBP12.61□□□□□ -0.39
LIMS3-201ENST00000437679 STUMQ69YW2 141 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 RBMS3Q6XE24 437 aaKnown RBP12.61□□□□□ -0.39
LIMS3-201ENST00000437679 BTN2A1Q7KYR7 527 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF573Q86YE8 665 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 PRSS35Q8N3Z0 413 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 OR5T2Q8NGG2 359 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 C22orf15Q8WYQ4 148 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 AQP3Q92482 292 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 TMIGD2Q96BF3 282 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 UPRTQ96BW1 309 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 DNTTIP1Q9H147 329 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 C8orf4Q9NR00 106 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 SLC7A11Q9UPY5 501 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 DNHD1Q96M86 4753 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 ANKRD61A6NGH8 418 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 H3BSH0 61 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 J3QLW9 94 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 J3QT63 122 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 SERPINA3P01011 423 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 HTR1AP08908 422 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF19P17023 458 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 KIR3DL2P43630 455 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 HAAOP46952 286 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 OR12D2P58182 307 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 FGF12P61328 243 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 ELF3P78545 371 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-201ENST00000437679 LRRC36Q1X8D7 754 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 LRRC10Q5BKY1 277 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 ATPAF1Q5TC12 328 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-201ENST00000437679 TMEM244Q5VVB8 128 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 FAM216BQ8N7L0 139 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 OR2G2Q8NGZ5 317 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 ZFAND2BQ8WV99 257 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 MS4A7Q9GZW8 240 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-201ENST00000437679 AMBNQ9NP70 447 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 NLKQ9UBE8 527 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF69Q9UC07 566 aa12.6□□□□□ -0.39
LIMS3-201ENST00000437679 RPL36Q9Y3U8 105 aaKnown RBP12.6□□□□□ -0.39
LIMS3-201ENST00000437679 IGHV3OR16-10A0A075B7F0 116 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 A0A1B0GW55 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 LOC107986453A0A1B0GWG9 222 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 PQLC2LA1A4F0 135 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 OR2AT4A6NND4 320 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF879B4DU55 563 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 TRIM77I1YAP6 450 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 GPR37O15354 613 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 GATBO75879 557 aaKnown RBP12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L2P0CJ85 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L3P0CJ86 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L4P0CJ87 422 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L5P0CJ88 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L6P0CJ89 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L7P0CJ90 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 IGHV4-38-2P0DP08 117 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 GABRA2P47869 451 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 TGM4P49221 684 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 RAB40BQ12829 278 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 IKZF1Q13422 519 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 GALEQ14376 348 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 METTL11BQ5VVY1 283 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 LPCAT4Q643R3 524 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 FDX2Q6P4F2 183 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4L9Q6RFH8 374 aaPredicted RBP12.59□□□□□ -0.39
LIMS3-201ENST00000437679 LHFPL3Q86UP9 236 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 PACRGLQ8N7B6 248 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 ANGPTL6Q8NI99 470 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 C10orf35Q96D05 121 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 MED30Q96HR3 178 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 C4orf36Q96KX1 117 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 ALG8Q9BVK2 526 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 INPP5EQ9NRR6 644 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 RASL12Q9NYN1 266 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 DUX4Q9UBX2 424 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 POLDIP2Q9Y2S7 368 aa12.59□□□□□ -0.39
LIMS3-201ENST00000437679 TRAV40A0A0B4J280 105 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 FAM230AA0A1W2PPH8 454 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 FCN3O75636 299 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 TOX4O94842 621 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 AMY2BP19961 511 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 IL13RA1P78552 427 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 SMIM21Q3B7S5 101 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 KLHL22Q53GT1 634 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 GPR157Q5UAW9 335 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 TTC23Q5W5X9 447 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF788Q6ZQV5 615 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 EGFL6Q8IUX8 553 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 RDH10Q8IZV5 341 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 POC1AQ8NBT0 407 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 TRMT10AQ8TBZ6 339 aaKnown RBP12.58□□□□□ -0.4
LIMS3-201ENST00000437679 APH1BQ8WW43 257 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 CYGBQ8WWM9 190 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 RNF166Q96A37 237 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms