RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SF3B6Q9Y3B4 125 aaKnown RBP11.86□□□□□ -0.51
SDC1-204ENST00000429035 IGKV1D-17A0A075B6S4 117 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 ATP8B1O43520 1251 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 TSPAN9O75954 239 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 PSG2P11465 335 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 FAHP16930 419 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 COX7A1P24310 79 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 DCTDP32321 178 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 ACSM1Q08AH1 577 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 APOFQ13790 326 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 LRRC75BQ2VPJ9 315 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 SLC35E4Q6ICL7 350 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 TMEM179BQ7Z7N9 219 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 ADGRG5Q8IZF4 528 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 OR4C13Q8NGP0 309 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 ASB9Q96DX5 294 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 DMRTB1Q96MA1 342 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 NKX3-1Q99801 234 aaPredicted RBP11.85□□□□□ -0.51
SDC1-204ENST00000429035 TEX12Q9BXU0 123 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 C19orf12Q9NSK7 152 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 IKZF2Q9UKS7 526 aa11.85□□□□□ -0.51
SDC1-204ENST00000429035 TRBV23-1A0A0A0MS06 115 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 ARRDC5A6NEK1 342 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 GSC2O15499 205 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 HMGN1P05114 100 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 OSMP13725 252 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 CALB2P22676 271 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 CEBPDP49716 269 aaPredicted RBP11.84□□□□□ -0.51
SDC1-204ENST00000429035 ESRRGP62508 458 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 GK3PQ14409 553 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 PLA1AQ53H76 456 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 SLC35D3Q5M8T2 416 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 LCN1P1Q5VSP4 162 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 TMEM236Q5W0B7 351 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 MKXQ8IYA7 352 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 BEND2Q8NDZ0 799 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 OR5D13Q8NGL4 314 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 ZNF671Q8TAW3 534 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 ZNF488Q96MN9 340 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 FAM234AQ9H0X4 552 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 OR51I2Q9H344 312 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 GPR84Q9NQS5 396 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 FAM206AQ9NX38 181 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 FOXJ3Q9UPW0 622 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 PIGLQ9Y2B2 252 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 MAB21L2Q9Y586 359 aa11.84□□□□□ -0.51
SDC1-204ENST00000429035 PLXNB1O43157 2135 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 TMEM269A0A1B0GVZ9 245 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 OR5B21A6NL26 309 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 RFPL4AA6NLU0 287 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 RFPL4AL1F8VTS6 287 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 BMXP51813 675 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 HERPUD1Q15011 391 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 SMIM21Q3B7S5 101 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 ZNF829Q3KNS6 432 aaPredicted RBP11.83□□□□□ -0.52
SDC1-204ENST00000429035 CEACAM21Q3KPI0 293 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 HCP5Q6MZN7 132 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 KCTD18Q6PI47 426 aaPredicted RBP11.83□□□□□ -0.52
SDC1-204ENST00000429035 KLHDC1Q8N7A1 406 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 OR4M1Q8NGD0 313 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 OR2T6Q8NHC8 308 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 OR51E1Q8TCB6 317 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 CANT1Q8WVQ1 401 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 AQP3Q92482 292 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 THTPAQ9BU02 230 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 MROQ9BYG7 248 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 PBOV1Q9GZY1 135 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 TVP23BQ9NYZ1 205 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 OR14J1Q9UGF5 321 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 ENPP5Q9UJA9 477 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 ZNF222Q9UK12 451 aa11.83□□□□□ -0.52
SDC1-204ENST00000429035 A0A1W2PPH5 198 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 SLC1A7O00341 560 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 VSIG10L2P0DP72 767 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 PIPP12273 146 aaPredicted RBP11.82□□□□□ -0.52
SDC1-204ENST00000429035 CCL3L1P16619 93 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 ALOX5APP20292 161 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 PRKACGP22612 351 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 RIDAP52758 137 aaKnown RBP11.82□□□□□ -0.52
SDC1-204ENST00000429035 LGALS4P56470 323 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 RPL31P62899 125 aaKnown RBP11.82□□□□□ -0.52
SDC1-204ENST00000429035 MFGE8Q08431 387 aaPredicted RBP11.82□□□□□ -0.52
SDC1-204ENST00000429035 RIPPLY1Q0D2K3 151 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 SNAPC1Q16533 368 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 FAM76BQ5HYJ3 339 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 ZNF684Q5T5D7 378 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 ZNF782Q6ZMW2 699 aaPredicted RBP11.82□□□□□ -0.52
SDC1-204ENST00000429035 ACP7Q6ZNF0 438 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 TRPM8Q7Z2W7 1104 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 SPATA24Q86W54 205 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 TEAD3Q99594 435 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 YIPF3Q9GZM5 350 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 C1orf21Q9H246 121 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 RAB18Q9NP72 206 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 GPR173Q9NS66 373 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 COPS3Q9UNS2 423 aa11.82□□□□□ -0.52
SDC1-204ENST00000429035 A0A0U1RQV5 110 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 CCDC182A6NF36 153 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 PRR32B1ATL7 298 aa11.81□□□□□ -0.52
SDC1-204ENST00000429035 G3V4G9 280 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms